| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1333 |
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| Symbol | |
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| ID | 4603585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1624715 |
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| End bp | 1625404 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780683 |
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| Product | lipoprotein releasing system ATP-binding protein LolD |
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| Protein accession | YP_927210 |
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| Protein GI | 119774470 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein
[TIGR02324] phosphonate C-P lyase system protein PhnL |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0369942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAGACA TACTGCTTAA GGTCGAAAAC GTCAGCAAAA CCTATCGGGA AGGCAAACTG
GAAACCCAGG TGCTGTGCGG GGTGGATCTT TCGGTATACC GCGGCGAGCA ATTGGCCATT
GTGGGCGGCT CTGGCTCGGG TAAAAGTACG CTGCTGCACA TCATGGGCTC TCTGGATAAA
CCCACCAGTG GCAAGGTGCT GCTGGAAGGT GAAGATCTGT ACAGCTTGAG TGCGGCACGC
CAGGCGCAAA TCCGAAACGC CAGCCTCGGC TTTATCTATC AGTTTCATCA TTTGTTGCCC
GAATTCAGCG CACTGGAGAA TGTGGCCATG CCGGCTCGTA TCGCCGGAGT GGATAAAAAA
ACCGCCTTTG GCCGCGCAGA AGCCCTGCTG GAGCGGGTTG GTCTGAGTCA CAGGCTGTCC
CACGCGCCCT CAGAGCTTTC CGGTGGTGAG CGTCAGCGTG TAGCCATTGC CAGGGCGCTA
ATCAATCAGC CCAGGCTGGT GCTGGCTGAT GAACCCACGG GTAACCTGGA TGCCGCCAGC
GGTGAAGCCG TATATGCCCT TATTCGCGAG CTGGCAGCCC AGCTTGGCAC CGCCTTCGTG
GTGGTGACCC ACGACAATGC GCTGGCCGCG CGCATGGACA GGCAGTTATC GATGAAAAGC
GGCAAATTAA CCACCGGAGC CCGCCAATGA
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| Protein sequence | MQDILLKVEN VSKTYREGKL ETQVLCGVDL SVYRGEQLAI VGGSGSGKST LLHIMGSLDK
PTSGKVLLEG EDLYSLSAAR QAQIRNASLG FIYQFHHLLP EFSALENVAM PARIAGVDKK
TAFGRAEALL ERVGLSHRLS HAPSELSGGE RQRVAIARAL INQPRLVLAD EPTGNLDAAS
GEAVYALIRE LAAQLGTAFV VVTHDNALAA RMDRQLSMKS GKLTTGARQ
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