| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1322 |
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| Symbol | |
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| ID | 4603574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1609167 |
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| End bp | 1611785 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780672 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_927199 |
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| Protein GI | 119774459 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.425671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.143441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAAAT CGCTCGTTAT TGTCGAATCG CCGGCGAAAG CCAAGACCAT CAACAAGTAT
CTTGGTAAAG AATTTATTGT GAAATCGAGT GTTGGCCACA TTCGTGATCT GCCAACCTCG
TCTGCCGCCG AAGGCAAAGC CAGCACCAAG TCAGCTGCCG AAGTTCGCAA GATGAATCCT
GAAGAAAAGG CCAAATACAA GGCTCAAAAG GACAAGCAAG CCTTGGTTGC CCGAATGGGT
GTTGACCCCG AACATGGATG GCAAGCCAAC TACCAGGTAC TCCCCGGTAA AGAGAAGGTG
GTCAAAGAAC TGCAATCTCT CGCCAGCAGC GCTGACCAAA TCTATCTCGC AACCGACTTG
GATAGAGAAG GGGAGGCCAT TGCCTGGCAT TTGCAGGAAG TGATAGGCGG CGACGAGTCA
AGATATAAGC GCGTGGTATT TAACGAAATT ACCAAAGGCG CTATTCAGGA GGCCTTTAGC
CGTCCCACTG ATTTGAACAC CAATATGGTT AACGCCCAGC AAGCTCGCCG GTTCCTAGAC
CGGGTAGTGG GCTTTATGGT ATCGCCTTTG CTGTGGAAAA AAGTGGCCCG GGGCTTGTCT
GCTGGTCGCG TGCAATCGGT TGCAGTGCGG TTGGTGGTTG AGCGTGAAGC TGAAATCAAG
GCTTTCGTGC CGGAAGAGTT TTGGGATGTT CATGCTACCC TGAGTACACC CGCGGCGGCT
GAGTTGGTGA TGGAGGTCAG TCGCTATCGG AATGAGGCTT TTGAACCTGT TACTCAATCA
GAGGCCATGG CGGCGGTTAA TGCGCTTGAA AAAGCGGCTT TCACCGTCAC TGACCGTGAG
GACAAGGCTA CCTCCAGTAA ACCAAGCGCT CCCTTTATTA CCTCCACCCT GCAACAGGCG
GCGAGCACCC GTTTGGGCTT TGGGGTGAAG AAGACCATGA TGCTGGCCCA AAGGCTCTAC
GAAGCGGGTC ACATCACCTA TATGCGTACT GACTCAACCA ATTTGAGCCA GGAAGCGCTT
GAAAATGTGC GAGCGCACAT TGAAAAGGAA TTTGGCAGTA AGTACTTACC CGAGTCTCCT
ATTCGTTACG GCAGTAAAGA GGGTGCACAA GAGGCTCACG AAGCCATACG TCCTTCAAAC
GTTAAGGTAG AGTCGGCAAC CCTGATCGAT ATGGAAAGGG ACGCGCAGCG GCTCTATGAG
CTGATTTGGC GGCAATTTGT GGCCTGTCAG ATGACGCCTG CCGTTTACGA TGCGACCCGG
ATAACTGCCA AAGCCGGCGA TTATGAGCTC AAGGCAAGCG GCCGTATTCT CAAATTTGAT
GGTTGGACCC GTGTACAACC TGCACTGAAG AAAAAGAACG AAGAAGATAA TACCCTGCCG
GATGTGCAGG TGGGGGATAT GCTCTCGCTT AAGGCACTGG ATCCCAAGCA GCACTTCACC
AAGCCCCCAG CGCGCTACAG CGAAGCCTCA CTGGTTAAAG AGCTCGAAAA GCGCGGTATT
GGCCGTCCAT CAACCTACGC AGCCATCATC TCGACCATTC AGGACCGTGG CTACGTGAAG
GTGGAAAACC GCCGTTTCTA CGCCGAAAAA ATGGGTGAGA TTGTCACCGA GCGTTTGGTC
GAAAGCTTCA GCGAGCTGAT GAACTACGAC TTTACGGCGG GAATGGAACA GACCCTGGAC
GATGTTGCCA AGGGCGACAA AGACTGGAAA GGCGTGCTGG ACGGTTTTTA CAGCGGTTTT
ACTGCCAAGC TGGAGAAAGC CGAGGCTGAA CCCGATGCTG GCGGTATGCG CCCCAATCAA
ATGGTGCTGA CGGATATCCC CTGTCCTACC TGTGGCCGCC AAATGGGGAT CCGTACCGGC
ACCACAGGTG TGTTCCTGGG CTGTTCAGGT TATGCCTTGC CCCCCAAAGA GCGTTGTAAG
ACGACCCTGA ATCTGACGCC GGGTGAAGAA GCCATCAGCG ACAGCAGTGA AGATGCCGAG
ACCGATGCGC TCAGAGCCAT GCACCGCTGT GGCAAGTGCG GTATGGCCAT GGACTCCTAC
TTGCTGGACG AAACCCGAAA ACTTCACGTG TGCGGTAATA ACCCCGAGTG TGACGGTTAT
GAGGTCGAAA AAGGCGCATT TAAGCTTAAA GGCTATGAAG GCCCTATTAT CGAGTGCGAC
CGCTGTGGCA GTGATATGGA GCTGAAAAAC GGCCGATTTG GCAAGTATTT CGGCTGTACC
AATGAGAGCT GTAAAAATAC CCGTAAGCTC CTTAAAAATG GTGAAGCTGC GCCACCGAAG
GAGGATCCTA TCCATCTTCC TGAGCTGAAA TGTACCAAGT CTGACGCCTA TTTTGTGCTC
AGAGACGGCG CTGCCGGGAT CTTCCTTGCG GCCAGTACTT TCCCACGCTC ACGGGAAACC
CGCGCGCCTT TGGTGGAAGA ACTGAAGAAA TACCGTGAAG CCCTGTGGCC CAAGTACCAG
TATCTGGCCG ATGCGCCTGT TGAGGATGCC GAGGGTAACA AGGCGCTGGT GAAATTCAGC
CGTAAGACCA AGGAGCAATA TGTGGCCACT GAAGTCAATG GTAAGGCCAC CGGGTGGAGC
GCTCACTTCA AAGACGGCAA ATGGGTTGAG TCCAAGTAA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKEFIVKSS VGHIRDLPTS SAAEGKASTK SAAEVRKMNP
EEKAKYKAQK DKQALVARMG VDPEHGWQAN YQVLPGKEKV VKELQSLASS ADQIYLATDL
DREGEAIAWH LQEVIGGDES RYKRVVFNEI TKGAIQEAFS RPTDLNTNMV NAQQARRFLD
RVVGFMVSPL LWKKVARGLS AGRVQSVAVR LVVEREAEIK AFVPEEFWDV HATLSTPAAA
ELVMEVSRYR NEAFEPVTQS EAMAAVNALE KAAFTVTDRE DKATSSKPSA PFITSTLQQA
ASTRLGFGVK KTMMLAQRLY EAGHITYMRT DSTNLSQEAL ENVRAHIEKE FGSKYLPESP
IRYGSKEGAQ EAHEAIRPSN VKVESATLID MERDAQRLYE LIWRQFVACQ MTPAVYDATR
ITAKAGDYEL KASGRILKFD GWTRVQPALK KKNEEDNTLP DVQVGDMLSL KALDPKQHFT
KPPARYSEAS LVKELEKRGI GRPSTYAAII STIQDRGYVK VENRRFYAEK MGEIVTERLV
ESFSELMNYD FTAGMEQTLD DVAKGDKDWK GVLDGFYSGF TAKLEKAEAE PDAGGMRPNQ
MVLTDIPCPT CGRQMGIRTG TTGVFLGCSG YALPPKERCK TTLNLTPGEE AISDSSEDAE
TDALRAMHRC GKCGMAMDSY LLDETRKLHV CGNNPECDGY EVEKGAFKLK GYEGPIIECD
RCGSDMELKN GRFGKYFGCT NESCKNTRKL LKNGEAAPPK EDPIHLPELK CTKSDAYFVL
RDGAAGIFLA ASTFPRSRET RAPLVEELKK YREALWPKYQ YLADAPVEDA EGNKALVKFS
RKTKEQYVAT EVNGKATGWS AHFKDGKWVE SK
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