| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1305 |
|---|
| Symbol | |
|---|
| ID | 4603557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1589045 |
|---|
| End bp | 1589881 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639780655 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927182 |
|---|
| Protein GI | 119774442 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3220] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0297196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.064547 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTAT CCTCGCTGGC CGGACTGGGG CTAAGGCGCG AAATGTTGGC TGAATTCAGT
CAATCGGTAC CGGCACAAAT CGATTTTTTT GAAGTCGCCC CGGAAAACTG GATGGCACTT
GGTGGTAAAT ACGGCAAACA ATTCCGTGCT TTAACCGAGC GTCATGCATT TTTCTGTCAC
GGCTTGTCCC TGTCTATCGG TAGCAGTGCG CCGCTGGACA TTGACTTTAT CAAGGGCATT
AAAGCCTTCC TCGATTTGCA CGGAATAGCA GTATATTCAG AGCACTTGAG CTACTGCTCT
GGCTCTGGGC ACCTGTACGA TTTAATGCCC ATGCCTTTTA CCCCTGAGGC TGTTCGTCAT
ATCGCCGGAC GGGTGAAGCA GGTGGAAGAC ATCATTGAGC GGCCGTTAAT CCTGGAAAAC
ATCTCGTTTT ACGCCGCGCC CGGCGCACAG ATGACGGAGC TGGAGTTTGT GCTGGCCGTG
CTGGAAGAGG CGGATTGCCA GCTACTGCTG GACGTGAACA ACATCTATGT GAATTCAATC
AACCACAATT ATGATGCGGC TGCGTATCTT GCTGCCATGC CCACCGAGCG TATACGTTAT
CTCCATGTGG CAGGGCACTA CGTGGAAGCC CCAGATCTGA TAGTAGATAC CCATGGGGCA
GACATAGTCG ACCCGGTTTG GCAACTGCTC TGTGACTGTT ATGCGCTGCA CGGGCCTCTA
CCTACCTTGC TCGAACGGGA TTTCAATATC CCGCCGATAG GGGAGCTGCT TCAGGAAATT
GATCGCATTC GGGATTATCA GGCTGCGGCA ATTCGAACCA GCAGGAGGGC CGGATGA
|
|---|
| Protein sequence | MAVSSLAGLG LRREMLAEFS QSVPAQIDFF EVAPENWMAL GGKYGKQFRA LTERHAFFCH
GLSLSIGSSA PLDIDFIKGI KAFLDLHGIA VYSEHLSYCS GSGHLYDLMP MPFTPEAVRH
IAGRVKQVED IIERPLILEN ISFYAAPGAQ MTELEFVLAV LEEADCQLLL DVNNIYVNSI
NHNYDAAAYL AAMPTERIRY LHVAGHYVEA PDLIVDTHGA DIVDPVWQLL CDCYALHGPL
PTLLERDFNI PPIGELLQEI DRIRDYQAAA IRTSRRAG
|
|---|
| |