| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1282 |
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| Symbol | |
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| ID | 4603534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1571243 |
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| End bp | 1572952 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780632 |
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| Product | signal transduction histidine kinase, LytS |
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| Protein accession | YP_927159 |
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| Protein GI | 119774419 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3275] Putative regulator of cell autolysis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0211527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTTA TCCTGCTGCT GACCCAGCAA ATGTGTCTCT ACTTGGTGTT TGTTTACCTC
GCCAGTAAAA CACCTCTGTT TAAGGTTCTC ACCGAAAACG CCCCCAGATT GCCCCACAAG
GTCATCATCT ATGTTATTTT TTCGGCCTTC TGCATTATGG CCACCTACTT TGGCGAGCAA
ACCCACGGCG CAATAGCCAA TACCAGGGCC ATGGGAGCCG TACTCGGTGG CCTGCTCGGT
GGACCTGTGA CCGGCTTTTT TGTTGGCCTT ACCGGCGGCC TGCACAGGTA TAGCATGGGG
GGCTTTACCG ATGTCGCCTG CGCACTCTCG ACAACGCTCG AGGGGCTTTC TGCCGGGCTT
ATCAGCCTGA CACTTCGCCG AGCCGGAAAA ACCGAACTGA TTTTCCACCC TCTGGTGGCT
GGCTTTGTTA CCTTCTATGC CGAAGTCATG CAAATGCTCA TCATACTGCT GGTCGCCAAA
CCCTATGACG AAGCCTGGGC ACTGGTGAGG CAAATTGCCC CTCCCATGCT GCTGGTGAAC
TCCATGGGCT CGGCCCTCTT TATGAGCATG CTCAAAGATC AAAAAGCGAT GTTTGATAAG
CTCTCCTCCA CCTTTTCCAC CAAGGCGCTG AAGATTGCGG AACGCAGTGT TGGGCTCTTG
TCTCAGGGAT TTAACGAAAA AACCAGCGCC CAGGTCGCCC GAATTGTTAT CGAAGAAACC
AATGTTGGCG CCGTGGCCAT CACTGACAGG GAAAAACTGC TCGCCTTTAT TGGTATTGGC
GCCGACCACC ATATACCGGG AACACCCATT GCCTCGGCCA TCACACTCGA AGCTATCCGA
GACAACAAGG TAATGTTTGC CGATGGGATG GAAGTGCCCT ACGCCTGTTC TATTTCCTCC
CAATGCCGTT TGGGTTCAAG TTTGGTGATC CCCCTTCGCA GCGATACTGA AGTCATAGGC
ACCATTAAGC TCTACGAGCC CAAGAACAAA TTATTTTTAA ACATCAACCG CACCCTTGGC
GAAGGTATTG CCAAACTCCT GTCCAACCAA ATCCTCTATG GTCGGGTAGA GCAACAAAAG
AACCTGCTCA CCCAAACCGA GCTTAAGCTG TTGCAGGCGC AGGTAAACCC CCATTTCCTG
TTCAATGCGC TTAATACCAT TGGCGCCATC ATTCGCCGCG ACCCTGATAT GGCTCGCGGA
CTGCTGCAAA AGCTATCGCA GTTTTTACGC ATTAATCTGA AACGCAGCCC GGAAATGGTT
ACCCTGGCCG ATGAACTTGA GCATATCGAC GCCTACCTTG GCATCGAAAA AGCCCGTTTT
ATCGATCGCC TCAGCGTGAA TATCGCCATC CCCCCCGAAC TGATGCACCA GAAGCTACCC
GCCTTTACTC TGCAACCCAT TATCGAAAAT GCTGTAAAAC ACGGCACCTC ACAATTGCTG
TCACCGGGCG TGATTGACGT GAGTGGCAGG CAGCAGGAGC AGATGCTGGT GTTGGAAGTC
GCCGACAACG CGGGGTTGTA TCGCCCCACT CCCAACAATG AAGGTCTGGG GATGAATCTG
GTGCATAAAC GCATTCAAAA TCAATTTGGA GAACAGTACG GCGTGACGGT TGAATGCGAA
CCCGATACGC TCACCCGGGT CAGAATTTGC CTGCCAATCA ACGTCGACAC ACCCATCGAC
ACCGACAATT CGGGAGACAA GCCGAGATGA
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| Protein sequence | MSLILLLTQQ MCLYLVFVYL ASKTPLFKVL TENAPRLPHK VIIYVIFSAF CIMATYFGEQ
THGAIANTRA MGAVLGGLLG GPVTGFFVGL TGGLHRYSMG GFTDVACALS TTLEGLSAGL
ISLTLRRAGK TELIFHPLVA GFVTFYAEVM QMLIILLVAK PYDEAWALVR QIAPPMLLVN
SMGSALFMSM LKDQKAMFDK LSSTFSTKAL KIAERSVGLL SQGFNEKTSA QVARIVIEET
NVGAVAITDR EKLLAFIGIG ADHHIPGTPI ASAITLEAIR DNKVMFADGM EVPYACSISS
QCRLGSSLVI PLRSDTEVIG TIKLYEPKNK LFLNINRTLG EGIAKLLSNQ ILYGRVEQQK
NLLTQTELKL LQAQVNPHFL FNALNTIGAI IRRDPDMARG LLQKLSQFLR INLKRSPEMV
TLADELEHID AYLGIEKARF IDRLSVNIAI PPELMHQKLP AFTLQPIIEN AVKHGTSQLL
SPGVIDVSGR QQEQMLVLEV ADNAGLYRPT PNNEGLGMNL VHKRIQNQFG EQYGVTVECE
PDTLTRVRIC LPINVDTPID TDNSGDKPR
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