| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1277 |
|---|
| Symbol | ribA |
|---|
| ID | 4603529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1566656 |
|---|
| End bp | 1567273 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780627 |
|---|
| Product | GTP cyclohydrolase II |
|---|
| Protein accession | YP_927154 |
|---|
| Protein GI | 119774414 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0807] GTP cyclohydrolase II |
|---|
| TIGRFAM ID | [TIGR00505] GTP cyclohydrolase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00126287 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAA AGTATGTCGC CACCTCCAAG TTGCCAACGC CCTGGGGCGT TTTTGCCATG
CACGGTTTTG AAGACAGTGA AACCGGAAAG GAGCATGTGG CACTGACCTT TGGCGATCTC
AGTGGTGATG CTCCTGTACT GGGACGGATC CATTCTGAAT GTTTGACCGG TGACGCCCTG
TTCAGCCTGC GCTGTGACTG TGGTTTTCAG CTGCAAACAG CCATGCAGCG CATCGCTGAA
ACCGGCCGTG GCTTTATTTT GTATCTGCGT CAGGAAGGGC GCGGCATTGG TCTGCTAAAC
AAAATCCGTG CCTATGAGTT GCAGGATAAA GGAGCCAATA CCGTCGAGGC CAACGAGCAG
CTCGGATTTG CCGCCGATAT GCGCAAGTAC GATATGATAG CCCCCATGTT GGCGCATCTG
GGTATTTCCC GGGTCAAGCT GATGACCAAT AATCCCCGTA AAGTCAACGC CATGAAAGAT
GTGGGTATGG ATGTGGTTGA GCGAGTACCG CTGCAGGTGG GGAAAAATCG CTACAACGAA
GCTTACCTCA AAACCAAGTC TGATAAGCTC GGACACATGA TGTCTGAAGA GCACTTCAAG
GCTCAGCATC AGGACTGA
|
|---|
| Protein sequence | MSIKYVATSK LPTPWGVFAM HGFEDSETGK EHVALTFGDL SGDAPVLGRI HSECLTGDAL
FSLRCDCGFQ LQTAMQRIAE TGRGFILYLR QEGRGIGLLN KIRAYELQDK GANTVEANEQ
LGFAADMRKY DMIAPMLAHL GISRVKLMTN NPRKVNAMKD VGMDVVERVP LQVGKNRYNE
AYLKTKSDKL GHMMSEEHFK AQHQD
|
|---|
| |