| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1273 |
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| Symbol | |
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| ID | 4603525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1560665 |
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| End bp | 1562035 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780623 |
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| Product | DEAD/DEAH box helicase-like protein |
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| Protein accession | YP_927150 |
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| Protein GI | 119774410 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00163925 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCAATTTT CTGATTTTTC CCTCGATAAG CGCCTCATGC AAAGCCTGAA GCACATGGGC
ATAGAGACGC CTACCCCCAT CCAGAGTCAG GCCATTCCTG TTGCCCTCGC GGGCAAAGAT
TTGATGGCCT CGTCCAAGAC GGGATCGGGA AAGACGCTGG CATTTTTGCT GCCTGCCATG
CAAAGGGTGA TTTCCAGCAA GGCGCTGTCG AAAAAAGACC CTCGGGTGCT TATTTTGCTG
CCCACACGAG AATTGGCTCA GCAGGTGTAT GCCCAGCTTC GTCTGCTGGT GGCCAACACC
CAATACCGGG CCATCAGCGT ACTGGGCGGT GAAAACTTTA ACGATCAGGC CAAGGCCCTT
GCAAGAGAGC CACATTTCAT TGTGGCGACG CCCGGTCGCA TCGCCGACCA TCTGCAGCAG
AGGCACCTTT TTTTAAACGG GCTCGAACTG CTGGTACTCG ACGAAGCCGA TCGCATGCTG
GATTTGGGCT TTGCACCTCA GCTGAAAGCC ATCAACGCCG CCGCCGACCA TCGCCGCAGA
CAAACCCTGA TGTTCTCGGC CACCCTGGAA CATGGCGAAG TGCACGAGTT GGCGGCAGAA
CTGCTCAAAG AGCCTGAACA TGTTGCCATC GATGCCGTGC ACCTGGGCCA CGGTGATATC
GAGCAACAAA TCCTGCTTGC CGACCATCTG GAACATAAAG AAGCCCTGCT TGAGCGCCTG
CTCAGCGGCA ATAACTTCCG TCAGGTGATG ATTTTTACCG CCACCCGTCA GGACACAGAG
CGCCTGGCCA CCCTGCTGGC CGAAAAAGGC TACAACACGG CAGCCTTGTC CGGCGAGCTG
CGCCAGGCAC AGCGCAATCA AATCATGGAC AGCTTCAGCC GTGAACATCA CCGCATTCTG
GTCACTACCG ACGTAGCTTC CCGCGGTCTG GATATCTCCA ACGTGTCCCT GGTGGTAAAT
TTCGACATGC CGAAGTTTGC CGAGGAATAC GTACATCGCA TTGGCCGCAC CGGCCGCGCA
GGAAACAAGG GCACCGCCAT TTCGCTGGTG GGACCAAAAG ACTGGGATAA TTTCCTCAAG
GTCCAGATCC TGCTGCAAAA GACTTTTGAG TTCAGCGTGC TTGAAGGTCT GGAAGCCAAG
TTCAAGGGGC TGGCGCCCAA GCGTGAACGC AAAGACGCCG GTGCCAAGGC AAAAGCTGCG
GGCAAGACCA AACGGCAAAC CGCAGATGCA CCCAAGGGTG AGAAACGCAG CCGTGACAAG
CGCTTCCTCA CCGGCGTGGA TGTGGGCGAT GCGCCAATGA TCCGTAAAAA GCCCCTCCCG
GCACCGATTG TGCCCGAGGA CGATGACGCT GATGAGCTGG GCGAAGACTG A
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| Protein sequence | MQFSDFSLDK RLMQSLKHMG IETPTPIQSQ AIPVALAGKD LMASSKTGSG KTLAFLLPAM
QRVISSKALS KKDPRVLILL PTRELAQQVY AQLRLLVANT QYRAISVLGG ENFNDQAKAL
AREPHFIVAT PGRIADHLQQ RHLFLNGLEL LVLDEADRML DLGFAPQLKA INAAADHRRR
QTLMFSATLE HGEVHELAAE LLKEPEHVAI DAVHLGHGDI EQQILLADHL EHKEALLERL
LSGNNFRQVM IFTATRQDTE RLATLLAEKG YNTAALSGEL RQAQRNQIMD SFSREHHRIL
VTTDVASRGL DISNVSLVVN FDMPKFAEEY VHRIGRTGRA GNKGTAISLV GPKDWDNFLK
VQILLQKTFE FSVLEGLEAK FKGLAPKRER KDAGAKAKAA GKTKRQTADA PKGEKRSRDK
RFLTGVDVGD APMIRKKPLP APIVPEDDDA DELGED
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