| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1268 |
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| Symbol | |
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| ID | 4603520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1554164 |
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| End bp | 1557226 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780618 |
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| Product | exonuclease SbcC, putative |
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| Protein accession | YP_927145 |
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| Protein GI | 119774405 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC
[TIGR03185] DNA sulfur modification protein DndD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0566832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000365685 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCCCT TAACCCTTGC CATCACCGCC TTTGGTCCCT TCGTGGACAC CCAAACCCTG
GACTTCCGCG CCCTTGGCGA GTGGCCCTTG TTCCTGATTA ACGGGCCGAC CGGAGCGGGC
AAAACCACGA TCCTCGATGC AATTTGTTTT GCACTTTACG GCAAAACCAC CGGCAATGAG
CGCGAAGGCA CCCAGATGCG CTGTGATGCC GCCCCCGATG ATGTGTTGAC CGAAGTAACC
TTTGAATTTG GTCTGGGTGA CAAGGTGTAT CGGGTGAAAC GGATGCCCGA GCAGCAGCGG
GCCAAAAAGA GCGGCGAAGG CTTTACGGTA CAAAAGAGTG ACGCCCTGCT TGAGCGTATT
GAAGGCGAAC ACACCACACC ACTTGCGGCC GGTAAAGTCA CTGAGGTCAC GGCGCAGATT
GAAGATCTGT TGGGGCTTGA GGTCGAGCAA TTTCGTCAGG TCATGGTGCT GCCCCAGGGG
CAGTTTCGAA AACTCTTGCT GGCAGACTCA AAAGAGCGTG AGGCTATTTT TGGCCAACTC
TTTCAAACCG GCATTTACAA ACGCATCGAA GACAGTCTCA AGCAAAAGGC GCTGGAGCTT
AAAGCCAGGG CCAAAGAGCT TGAGGCCCGA AGAGCGGGCA TTTTGGAAAC CGCCGGCGCC
GAGAGTGTAG AAGCTTTAAA TGATGCCATT TCAGCCTTAG CCCCCGAGCT TGCCAGTGCC
ACCAAGGCGA AACAGGCTGC CGAGGCAAAG CTTACTGCCG CCAAAGCACA GCGTGAGGCT
GCTGAGGCAA AGCTGCGGGA GTTCAGTGCC CTTAACGACA CCAGGCTGAG GTTGGAGGCT
GAAAACGCCA AAGCAGAGTC TATGGCGGCG CTTGGTATGC AGCTTGAGCG TGCCGCTCTT
GCAGAATCCC TTGCCGGTAC CTGGCAAGCG TGGGAAGAAC GTGCAAAAGA GCGAAAGAGT
GCTGAAGCCG CCGCAGTAAT GGCGGCTGAG GCCGCGAAGC AAGCAGAATT AAGTTATGCC
AATGCAAAAA CGGCTGCCGC CGCTTTGCCG GAATTGGAAG CCAGACGGCA TCAGCTGAAA
AATGAAGCCG AGCGACTGGC AGAGTGGCGC CCGCGGATGC ACCGGTTGTC GGCGCTAAAC
GAGGCTATCA CCGGGCTCGG GCAGACGCTT AACGCCCTGG ACGCCAATCT TGCCCATGTC
CGAAGCCGCC TTGGTGACAC TCAGGGGCGC ATAGCGATGC TTACCCAGCA GCGACGAGAC
TTGTCTGCGC TTGCGAGCAC TGCTGGCAGC CTTGAGGCCA CCTTGGTGCA GCAAACCCAC
GTGTTTGAGC GGCATCAGCA ATTGATTGAA AAAGAGCGTC AGGCGCAAAA GCTCGCCACC
GAGCTTTCGC GGCTGGAAGC GGATGGACGT CAGGCCAAGG CTAATCAGGA TAATCTGACC
CGTGCCCGTG AACTGCTCGA ACTCGCCTGG CATCAAGGGC AGGCGGCAAT GTTGGCGGCA
AGACTCTTAC CCGGTGCTCC TTGCCCGGTG TGCGGCAGTG TGGAGCATCC CAGTCCAGCC
CACCACGAGG GAGCGCTCCC AGGCGATGAT GAGCTTGCTG CAGCAAGAGA AGCCGAGCAA
CAGGCTCGGG AAATGCTGAG CCGCGCCCGC TCTGAATACA AAGCGCAGAA GCAGCGCCTG
GAGGTCATGC AGCAGGAGCT TGCCAATGAC GCCGCCGCGC TCGGTGACGC GCTTGCCACC
AGTCTTGAGC AAAAACAGTA TGCACTTGGC CAAAGGCGCG AGGCCTGCCA AAACGCGAAG
GCCGCCCAAC AATCGCTGCA AGCGCTGGAG CATGAGCTTG AGCAACTCGA CAACACGCAA
AAGCAGCTAC TTGCCGATAT CGATGGCCTG CAGCGCCAAC GAGATCAGCA CTCTGGAGAG
CTTCAAAAGG CCTGCGGCGA GCAAGAAAGC CTCGCTGGCG CCATGCCGGA ACTTTGTCAG
CGCCTTGGTA ACGAGCAGGC GTTTGATGCC CACCTTGCGG CGCTCTCTCA GGACATTGAG
GCCTTAAGCG GACAAATGGA AAAGCTGCAA ACCCAGCTGA GTGACGCTCA AATCCGTCAA
ACCCAATGCA ATGAGCGAAG GGCGGCGCTG CAGCAAACCT TGAGCGAGGC CCGCAGCCGT
GAAGCGGCGG CCAAAGCGCG CTTTGATACT GAGCTGGCAG CAAAGGGCTT TAATGATGTG
GTGAGTTTCA ATCAGGCACG CATGACAGCT GATGACATGG GCGATGCCAA AAGCCGTATT
GCCACCTGGC AGCAGCAGTT GGCTGGGCTT AAAGAGCGCA TGGCTGCACA GCAAGAATCC
CTTGGTGATG TGTTGCCACC GGATCTGACT GAGCTTGCTG CACTTGAAAC GGCGGCGCAG
GATGGCTTTA ACCAATGCAA CCAGCAATGG CAGGTACTCA ACGATACTCA GGTAATGTAC
AGCCGCGCCA GGGCACAGCT TGGCACCGAA GCCGAGGTCG CCGCCAGGCT CGATGAGGAA
TATGCCGTGG TGGGCACCTT GTCGGATGCA GCCAGTGGTA TGACGGGAGC CAGGATCAGC
CTGCAGCGGT TTGTGCTGGG TGTGCTCCTG GATGATGTGC TTATCGAGGC GAGCGAGCGT
TTGCATCGCA TGAGCAAAGG CCGTTACCGT TTGCTTCGCC GTGAAGACAA AGCCAAGGGC
AACCGGGCGT CGGGTTTGGA TTTGGAAGTG GAGGATGCCT ACACCGGCAA GTTGCGTCCC
GTAGCAACCC TGAGCGGCGG CGAAAGTTTC ATGGCCGCAT TGTCGCTGGC GCTGGGCTTG
TCAGATGTGG TTCAGGCCTA TGCGGGCGGT ATTAAGCTCG ACACCCTCTT TATCGATGAA
GGCTTTGGCA GTTTGGATCA GGACTCGCTG GAGCTGGCGG TGCGCACCCT GGTGGACCTG
CAATCATCAG GACGCATGAT AGGGGTGATA TCCCACGTGA CCGAGATGAA AGAGCAGATC
CAGACCCGGG TAGATATCCA TAAAGACACC GTAGGCAGTC AAATTCGCCT GACTGTAGCG
TGA
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| Protein sequence | MKPLTLAITA FGPFVDTQTL DFRALGEWPL FLINGPTGAG KTTILDAICF ALYGKTTGNE
REGTQMRCDA APDDVLTEVT FEFGLGDKVY RVKRMPEQQR AKKSGEGFTV QKSDALLERI
EGEHTTPLAA GKVTEVTAQI EDLLGLEVEQ FRQVMVLPQG QFRKLLLADS KEREAIFGQL
FQTGIYKRIE DSLKQKALEL KARAKELEAR RAGILETAGA ESVEALNDAI SALAPELASA
TKAKQAAEAK LTAAKAQREA AEAKLREFSA LNDTRLRLEA ENAKAESMAA LGMQLERAAL
AESLAGTWQA WEERAKERKS AEAAAVMAAE AAKQAELSYA NAKTAAAALP ELEARRHQLK
NEAERLAEWR PRMHRLSALN EAITGLGQTL NALDANLAHV RSRLGDTQGR IAMLTQQRRD
LSALASTAGS LEATLVQQTH VFERHQQLIE KERQAQKLAT ELSRLEADGR QAKANQDNLT
RARELLELAW HQGQAAMLAA RLLPGAPCPV CGSVEHPSPA HHEGALPGDD ELAAAREAEQ
QAREMLSRAR SEYKAQKQRL EVMQQELAND AAALGDALAT SLEQKQYALG QRREACQNAK
AAQQSLQALE HELEQLDNTQ KQLLADIDGL QRQRDQHSGE LQKACGEQES LAGAMPELCQ
RLGNEQAFDA HLAALSQDIE ALSGQMEKLQ TQLSDAQIRQ TQCNERRAAL QQTLSEARSR
EAAAKARFDT ELAAKGFNDV VSFNQARMTA DDMGDAKSRI ATWQQQLAGL KERMAAQQES
LGDVLPPDLT ELAALETAAQ DGFNQCNQQW QVLNDTQVMY SRARAQLGTE AEVAARLDEE
YAVVGTLSDA ASGMTGARIS LQRFVLGVLL DDVLIEASER LHRMSKGRYR LLRREDKAKG
NRASGLDLEV EDAYTGKLRP VATLSGGESF MAALSLALGL SDVVQAYAGG IKLDTLFIDE
GFGSLDQDSL ELAVRTLVDL QSSGRMIGVI SHVTEMKEQI QTRVDIHKDT VGSQIRLTVA
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