Gene Sama_1262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1262 
Symbol 
ID4603514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1550238 
End bp1550516 
Gene Length279 bp 
Protein Length92 aa 
Translation table11 
GC content56% 
IMG OID639780612 
Productpeptidyl-prolyl cis-trans isomerase C 
Protein accessionYP_927139 
Protein GI119774399 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0001567 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTCGTG CAACCGCCAG ACATCTTCTG GTTAGCTCGC AAGAACAATG CGAAGTACTG 
AAAAAGCTCA TCGAAGGTGG TGCCGATTTT GCCGACATCG CCAGAGAGCA TTCTGCCTGT
CCTTCAGGGA GCCAGGGTGG CGAGTTGGGC TCTTTTGGGC CGGGGATGAT GGTGCGGGAA
TTTGATGAAG TGGTGTTTTC TGCCCCGCTG CATGTGGTGC AGGGGCCGGT AAAAACCCAG
TTCGGCTATC ACCTGTTGGA AGTGACCAGC CGGGGATGA
 
Protein sequence
MVRATARHLL VSSQEQCEVL KKLIEGGADF ADIAREHSAC PSGSQGGELG SFGPGMMVRE 
FDEVVFSAPL HVVQGPVKTQ FGYHLLEVTS RG