Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1251 |
Symbol | |
ID | 4603503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1536292 |
End bp | 1537500 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639780601 |
Product | outer membrane porin, putative |
Protein accession | YP_927128 |
Protein GI | 119774388 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000429036 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000137517 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACAAGA CTCTCATCGC CGGCGCAATA TTGGCCTCGC TGGTGGCTCC CACCGTTTCT GCCATCGAAA TTTACAAAGA CGACAAAAAC GCCGTCTCCA TCGGTGGTTT TATCGACGCC CGCGCAATTC ATACCCAGGA CACCACAGAA GTGGTAAACG GTGCCTCTCG TATTAATTTT GGCTTTGAGC GTGCCCTCAG CCACGACTGG AAAGCCTTTG CCCTGCTCGA GTGGGGGATC AATCCCTTCG GCAGCAGTGA GATTGTTTAT AACAACAAAT TCGAAACCGT ACAGGACGAG TTCTTTTACA ACCGTCTTGG TTATGCCGGT CTGAGCCATG ACACCTGGGG TACCCTCACC ATCGGTAAAC AGTGGGGCGC ATGGTATGAC GTGGTCTACG GCACCAACTA CGGCTTTGTG TGGGATGGAA ACGCCGCGGG CGTTTATACC TACAACAAAG ATGATGGTGC AGTAAATGGC ACCGGCCGCG GTGATAAAGT CATCCAATAT CGTAACAGCG TGGGTGACTT CAGCTATGCC ATCCAGGCTC AGTTAAAAAA CAGCACTTTC TTCACCTGCG ACTTCGACGA TATCACTCAA GATGACTGCC AAGCCTTGTG GCAGCAGGGC AAGCGCGAAG CCCAGCAGGT TGAATATAAC TACACCTACG GCGGCGCAGT TACCTGGAAG GCAACTGACA AATTGGCATT GGCGGTGGGC GTAAACCGCG GTGAATTTGA TGTGACCTAT GGTAACGGCG ACCAAATTAC TGCGGTTGAT CTGATCTACG GCGTGGGCGC GACCTGGGGT GATTTTGACA CAGATGGTTT TTATGCCTCT CTTAATTACA ACTACAACGA AAACCACGAT ACAGACAACA TAGGTCGCTT GATTAAAGAG GCCTTTGGTA TCGAGTCACT GTTCTCCTAC AAATTTGAGA ATGGTTTCCG CGCATTTGTA TCTTATAACT TGCTGGACGC CGGTAACGAC TACGTTATCC AACCAAACTT TAATGCCGAC CCCAACGACG TATTCAAACG TCAATTTGTG GTAGCGGGTT TACATTATGT TTGGGATAAA GACACAGTGC TGTATGTGGA AGGACGTAAA GACTTCAGTG ATTTCAGCAG TGCCGATGTC GAACAGGAAG CGAGAATGGC GCTTTCGGAA GATGACGGTA TCGCAATAGG CATTCGTTAC ACATTGTAA
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Protein sequence | MNKTLIAGAI LASLVAPTVS AIEIYKDDKN AVSIGGFIDA RAIHTQDTTE VVNGASRINF GFERALSHDW KAFALLEWGI NPFGSSEIVY NNKFETVQDE FFYNRLGYAG LSHDTWGTLT IGKQWGAWYD VVYGTNYGFV WDGNAAGVYT YNKDDGAVNG TGRGDKVIQY RNSVGDFSYA IQAQLKNSTF FTCDFDDITQ DDCQALWQQG KREAQQVEYN YTYGGAVTWK ATDKLALAVG VNRGEFDVTY GNGDQITAVD LIYGVGATWG DFDTDGFYAS LNYNYNENHD TDNIGRLIKE AFGIESLFSY KFENGFRAFV SYNLLDAGND YVIQPNFNAD PNDVFKRQFV VAGLHYVWDK DTVLYVEGRK DFSDFSSADV EQEARMALSE DDGIAIGIRY TL
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