| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1250 |
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| Symbol | |
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| ID | 4603502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1533668 |
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| End bp | 1536073 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780600 |
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| Product | DNA polymerase II |
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| Protein accession | YP_927127 |
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| Protein GI | 119774387 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0167112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000178487 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAATTGT CGTCCCCTTG CTACCCTGGC TTCAATGAAT CACTGGCTCC GATACTGCTC
AGGGGGCGGG TGCTCACGCG CGCCAATGTG CAGCGCAGCG GTGACACTGT GCTGGAATAT
CTGATTAAAA CCGTCAACGG GCCGGTGAAG GTGGAAGTGC ATAATCAAAG ACCCATGGCC
TTTTGCCATA GCGATGATGT AGAGCGCTTG CTCGTGGAGG GCGCTGAAAC TGAAGTCTGG
TCGCACCCAC TCGAGCTGCA AAGTTTCAGC AGGCAACCCG TGCATGCAAT CTATTGCCGT
ACAGGGCTTA TGCTCAAGCG CCTCGTAAAT CGAGCGCAGG AGTTGGGTAT TGCGCTTTAT
GAGGCCGATA TCAAACCAGA GCAGCGCTTC CTGATTGAAC GTTTTGTGGC CCTTGATGCC
GAGTTTTTCG GCCACTTCGA CTCGAGCGGC CCAAGCCGGT TTGTTGCCAG CCGGGTGAGG
GCAACCAGTC AACACATTCC CCTGAAAGCG GTTTCCCTCG ATATCGAATG CAGTATGTCG
GGGGAGCTCT ATTCCATTGG TTTATATGGT GACTGCGAAC CCAAAGTCAT CATAGTCGGT
GAGGGGGAAA CCGAGCTCAC TTGCCATCGG GATGGGGTGG AACATAAGGT CGCCGTGGAG
TGGGCTTGTG ATGAAGTGGC CCTGCTGTTA TCGCTGCAGC GCTGGTTTAT GGAGGTTGAC
CCCGACATCC TCTTGGGCTG GGCTGTGGTG ACTTTCGATC TGTCGCTCCT GTGGCGTAGG
GCAAAACACC ATGGTATGCG GCTTTGCATC GGGCGGTTCG GTAAACCACT CGCTTGGAAA
GTAGAAGACA AGCACAGACC GGAGACCCTG GACTTGTCCG GACGGGTAGT TCTCGATGGT
ATTGATTGGT TAAAGGCCGC ATTTTACCAG TTTGACAGTT TCGCCTTGGA CAGGGTGGCG
GGTGAACTCC TGGGGGAGGG CAAAGCTATC CATAATCCTG ATGACCGTGG CGAAGAAATC
ACCCGGTTGT TTCGTGAAGA CAAAGCTGCT TTGGCCTATT ACAACCTCAC CGACTGCCGC
CTGGTGTGGG ATATTTTTCA AAAGACCGAT CTCATCCATT TTGCCCTTGA GCGGGCGCGC
CTCACTGGAT TGGAATTTGG TAGGGTGGGT GCCAGTATTG CGGCTTTTAA TCACCTTTAT
CTGCCCCATT TGCACCGGGC GGGTTTTGTG GCACCGGCAA TGCAAACAGT CCCCGGGCCC
GATAGCCCGG GTGGCTATGT GATGGATTCG GTTCCGGGCT TATATCGCAA CGTATTGGTG
CTGGATTACA AGAGCCTGTA TCCCTCCATC ATCCGAACCT TTTTAATCGA CCCCAAGGGG
CTCGTGCTCG GTCTATCTGA ACCTGAGGCC ATGTCTGTTG AAGGATTTCG CGGCGCGAGA
TTCAGTCGAC AGTCGCCCAT TTTGCCCAAA CTTGTTGCAA CACTGGCGAG TCGTAGAGAA
GAGGCAAAAG CTAACCAGAA CGGCCCCATG TCTCAGGCGG TGAAAATCAT CATGAACTCT
CTCTATGGGG TGCTGGGTTC CCGTGGATGT GTATTTCACG ATTATCGTTT GGCAAGCTCC
ATTACCCTGC GGGGGCATGA GATCATGCGC ACAACCAAGG CCTGGATAGA AGCGGAAGGA
TTTCAGGTCA TCTATGGCGA CACCGACTCT ACCTTCGTTT GGTTGGGTGA CGAGGCCGGG
AATGCAAAGG CCACGGGGCG TGCGCTTGTG GACATGGTGA ATCAGCGGTG GCGTGAGCAG
CTGCGAGAGG ATAAAGGACT TGAGTGCTTT TTGGAGCTTG AGTTTGAACG GCACTTCGAG
CAATTTTTTA TGCCCACACT CAGACACTCC ACCGAAGGAA GCAAAAAACG CTATGTTGGG
CTGTACGACA ATGGCAATGA AAAGGTACTT GTGTTCAAGG GAATGGAGCA GGTTAGAAGT
GACTGGAGTC CGCTGGCTCG CCGGGTTCAA TACGAACTTT ACCGGCGGTT ATTCCAGCAG
GAAAACTTGA CTGAGTATGT GCAGGAAGTA GAGAAGTCGT TGTATTCCGG AGAGCTCGAT
GATGAGCTGG TGTTCCATAA ACGTCTCAAG CGTGATATTA GCCAGTACAC GGCAAAATCC
GCTCCCCACG TGAAAGCCGC TGCCTTGCTT GTCAGTGCAA CGGGTGATGC CAACCGGGGA
AAGCGTGGTG CAGCTATCAG GTACCTCTTT ACCAAAGCGG GGGCTGAGCC CTTGGGTTTT
CAGTCTCAGC CAATTGATTA TGACTACTAC TACGACCGCC AATTGTTACC CATTTTGGAA
CCCATACTCG CCGTTTTGAA AATTAATTAC CAAAAATCAG GCGCTGAGCA ATTGTTGTTA
ATCTAG
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| Protein sequence | MELSSPCYPG FNESLAPILL RGRVLTRANV QRSGDTVLEY LIKTVNGPVK VEVHNQRPMA
FCHSDDVERL LVEGAETEVW SHPLELQSFS RQPVHAIYCR TGLMLKRLVN RAQELGIALY
EADIKPEQRF LIERFVALDA EFFGHFDSSG PSRFVASRVR ATSQHIPLKA VSLDIECSMS
GELYSIGLYG DCEPKVIIVG EGETELTCHR DGVEHKVAVE WACDEVALLL SLQRWFMEVD
PDILLGWAVV TFDLSLLWRR AKHHGMRLCI GRFGKPLAWK VEDKHRPETL DLSGRVVLDG
IDWLKAAFYQ FDSFALDRVA GELLGEGKAI HNPDDRGEEI TRLFREDKAA LAYYNLTDCR
LVWDIFQKTD LIHFALERAR LTGLEFGRVG ASIAAFNHLY LPHLHRAGFV APAMQTVPGP
DSPGGYVMDS VPGLYRNVLV LDYKSLYPSI IRTFLIDPKG LVLGLSEPEA MSVEGFRGAR
FSRQSPILPK LVATLASRRE EAKANQNGPM SQAVKIIMNS LYGVLGSRGC VFHDYRLASS
ITLRGHEIMR TTKAWIEAEG FQVIYGDTDS TFVWLGDEAG NAKATGRALV DMVNQRWREQ
LREDKGLECF LELEFERHFE QFFMPTLRHS TEGSKKRYVG LYDNGNEKVL VFKGMEQVRS
DWSPLARRVQ YELYRRLFQQ ENLTEYVQEV EKSLYSGELD DELVFHKRLK RDISQYTAKS
APHVKAAALL VSATGDANRG KRGAAIRYLF TKAGAEPLGF QSQPIDYDYY YDRQLLPILE
PILAVLKINY QKSGAEQLLL I
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