| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1248 |
|---|
| Symbol | |
|---|
| ID | 4603500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1530708 |
|---|
| End bp | 1531481 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780598 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927125 |
|---|
| Protein GI | 119774385 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000112038 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGAATTAC TGCAAGACCC CACCAGCCTG CTGTTGTTGG CGCTGGTCGG TCTGATTGCC
GGATTTATTG ACGCAGTTGT GGGCGGTGGC GGCCTCCTGT CGATTCCGGC ATTGCTGTCA
TTCGGACTAC CGCCCCATCA GGCGCTGGGT ACCAATAAAT TGTCGGCCTG TTTTGGCTCG
GCTACCGCGG CTTGGACCTA CTACCGGCAG CAACTATTGA CCCCGACCTT TTGGCGTCAC
AGTGCCGCAG CCACCTTTAT TGGCGCCCTG CTGGGGACAA TCGCCGTTTA CCTTACCGAT
GCCGGGATTT TGCAAAAGCT GCTGCCGCTC ATCATCATGG CTATCGCCCT TTACACCCTG
ATCAAACCCG CCGCCATTGA GCACCCAAAA GCACAGGAGC CACAGGCGCC GGCCAGCACC
AAACACCAAT GGATGCAGGG CGTGCCTCTG GGATTTTACG ATGGCTACGC CGGCCCCGGA
ATTGGTGCCT TTTGGACCTT GAGTTCGAGC CGCCTTTACC GTTTACCGGT ATTGCAAAAT
TGTGCCTTGG CAAGGGCCAT GACCCTGATT AGCAACATCA CCGCCTTATC AGTGTTTATG
ATCTTTGGCC AGGTTGACAT TGCAGTGGGT TTGTTTCTGG GCGCATCCAT GATGGCAGGG
GCCTACCTCG GTGCCCGCAG CGCCATTCAT TTTGGGCTTC CCTTTATTCG GCCAGTGTTT
ATTCTGATTG TGTTTGCCGC ATCCACCCAA CTCGCCTGGA GAGCCTGGTT TTGA
|
|---|
| Protein sequence | MELLQDPTSL LLLALVGLIA GFIDAVVGGG GLLSIPALLS FGLPPHQALG TNKLSACFGS
ATAAWTYYRQ QLLTPTFWRH SAAATFIGAL LGTIAVYLTD AGILQKLLPL IIMAIALYTL
IKPAAIEHPK AQEPQAPAST KHQWMQGVPL GFYDGYAGPG IGAFWTLSSS RLYRLPVLQN
CALARAMTLI SNITALSVFM IFGQVDIAVG LFLGASMMAG AYLGARSAIH FGLPFIRPVF
ILIVFAASTQ LAWRAWF
|
|---|
| |