| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1239 |
|---|
| Symbol | |
|---|
| ID | 4603491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1523143 |
|---|
| End bp | 1523538 |
|---|
| Gene Length | 396 bp |
|---|
| Protein Length | 131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780589 |
|---|
| Product | phage shock protein C |
|---|
| Protein accession | YP_927116 |
|---|
| Protein GI | 119774376 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02978] phage shock protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0689653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC GTGATGGCAG GACCCTCTAT CGCATTCCCC AGCAAGGCAA AATTGCCGGG
GTCTGCGCCG GAGTCGCCGA TTACTTCGGC TTCGAGACCT GGTTGGTGCG AGTGGTGGCC
GTGTCCATCT TCCTCCTTGG CGGCTCAGGT ATCATCTTCA TTCTTTACGT GGCCCTGTGG
ATGATTTTGG ATGTGAAGCC GGCATCGACA AAGGTCCACG ATGACATCAG CGAAATTGAG
GTCAAACGCA AGGTCTGGCA GGCCGGAGAA CCCGCCAAAC AGGCACTGGC CGATGTGAAC
AGTCGCTTCC GCTCCCTGGA GTCAAGGCTC CGGTCACTCG AGCGCTACGT GACATCAGAC
AACTACGACT TAAAGCGGCA AATCAATAAC CTTTAA
|
|---|
| Protein sequence | MSTRDGRTLY RIPQQGKIAG VCAGVADYFG FETWLVRVVA VSIFLLGGSG IIFILYVALW
MILDVKPAST KVHDDISEIE VKRKVWQAGE PAKQALADVN SRFRSLESRL RSLERYVTSD
NYDLKRQINN L
|
|---|
| |