Gene Sama_1209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1209 
Symbol 
ID4603461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1484259 
End bp1486448 
Gene Length2190 bp 
Protein Length729 aa 
Translation table11 
GC content55% 
IMG OID639780556 
Productdecaheme cytochrome c 
Protein accessionYP_927086 
Protein GI119774346 
COG category 
COG ID 
TIGRFAM ID[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00658895 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.327868 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAC GGTTCAACTT CAATGCCGCG ACAAAAGCGA TATTGGGTGC CGGATTACTG 
TCTTTAACGC TCGTCGGTTG CGGCAGCGAC GGCAAAGATG GTGAAGACGG CAAAGATGGT
GTCATTGGCG TCAGCATTGA CAAAACATCA ACCCTCAAAG CCACCTTTAC CAATGCCAGC
ATCGATGCCG GTGTACTGAG CGTTGACTTC ACCCTGGAAA ACGCCAACGG CGTTGCCGTG
TTGGGGCTGA CCAAGGATCA CGACCTGCGC TTTGGTATTG CCCAACTCGC CGAAGTGACA
GAGACAGTGG GTGAAGGCGA CCAGGCCACC GAAGCCAATC GCGGCTACCA GTGGCAAGCC
TACATCAACA GCAAAAAAGA GCCCAATCCA GCCTGGTTGC CAGAGGGCGA TGCCGATATC
AATCCCTCAG CTCAGTATCA GGCCAACGTA GAAGCCGCCA ATAAGTGCGA TACCTGCTTG
GTTGACCATG GTGACGGCAG CTACAGCTAT ACTTTCCAGA TTAATATCGC CAACGTTACC
GAGCCTCTGC CGGTTGTGTT TGACGCCAAT AACACTCAAA GAGCCACCCT GGAGCTGGAA
TTGCCCCAGG TCACCGCCAA CGCCCACTAT GACTGGCAGC CTGCCTCCGG CAAAACCGAA
GGCATTCAAA CCCGTGATGT GGTCAGTATT GAGACCTGTT ACACCTGCCA CCAACCTGAG
AGCCTCAAGC TCCACGGTGG TCGTCGTATC GACCTTGAAA ACTGTGCCTC TTGCCACACT
GCCACATCCG GCGATCCTGA GTCAGGCAAC AGTGTCGACT TTACCTATAT GATCCACGCC
ATCCATAAAG GCGAACATCG CATGACCTAC TCTCCAACCG AGGAGAAAAT GGTACAGGCG
CCATACAAGG TGATTGGATA TGGTGGCGGT ATGCATGACT ACAGCAAGGT CATGTATCCA
CAGGGACCCG CCGCGGACTG TGCTGCCTGT CACGTAGAAG GTGCTGGCGC CCCTGCCAAT
GCGGATCTCT TTAAAGCCAA CCTCAGCAAC ACCGCCTGTA TTGCGTGTCA CAGCGAGCTG
CCGTCCGACA CCCACTACAA GTACGGTGCG GGCACAGACT GTATGAGTTG CCACATCGAA
GATGGTTACT CACGCAGCGG CGCCGAAGCG CACGGTGATG TGCTCAAGGC TTATGACACC
ACCAAGGGGA TGTCAGTCAA GTTCAGTAAC ATAGGCGCAG ACACTAACGG TAAGTTCACC
TTCAAGGTGC AGGTGCTGGA TAAAGACGGC AACGCCGTTG GCACTGAGTT CCTCGACACC
AGCAGCCGCG TAGTTATGGC CTGGGACAGC GACAAAGATT ACCCCGGCTA CTATGAAGGC
TCCTACAGTA ACCGTCGTAT CGCCTTGAAA GAAGGCACCT ACGATGCCAC TGACAAGAGC
TACACCCTGA CGGCCAGCAA GATAAACCTG CCTGCGGATG CCAACGGCAA GACCTTTGAG
CTGTGGTCAG CACTGAAGGT GTGCTTCAAC AACGGCGGTT ATGGTCGTCC CGACGTGGTG
ATGACTGACT GCGCCACCGA CGGTGTGCGT AAGATTGAAG TGAAAGACGC GCCACTGCAC
TTCGTCTGGA AAGACGGTGG CGTGGACGAT GCAGCCAAAG CCGTCATGCG CCGTGAAATT
ATCGACTCGA CCAAGTGTCA GGGTTGTCAC AACCAGCAGG TGTATCACTA CGATAACGGT
GTGAACTGTC AGACTTGCCA CACCTCTGAC AAGACGACCA AAGATGACGC TGCATACCCA
GGTGGCAAGA AGCCAACCAG CTTTGCCTAC AAGGCTCACG GCGCTTCTGG TCACTACCTT
AAGTATGCCG GCGCCCAGAC TGGTACTGTA CTCAAGACCG ACTGCAGCAC ATGTCACACC
GACAAGGGTA TTACTCTGGG ACGTGCACCT GACCGTGTAT GGCGCTATGG CGACAAGGAC
AACGGCGGCG TGGATGTCTG GGTATCTTCC GATGCCGGTG CCTGCATGAG CTGTCACCAG
AAGTACATGG GTGACGCGGC CAAGGCACAC ATCGAAACCA ACGGCGGTAT TGTCGATGGT
ACCAGTGCTG ATGATGTGCG CACCCGTGCC AAGGAAAGCT GCTCTACCTG CCACACTGCA
GAGCAGATAC GTGGACTGCA CAACAAATAA
 
Protein sequence
MMKRFNFNAA TKAILGAGLL SLTLVGCGSD GKDGEDGKDG VIGVSIDKTS TLKATFTNAS 
IDAGVLSVDF TLENANGVAV LGLTKDHDLR FGIAQLAEVT ETVGEGDQAT EANRGYQWQA
YINSKKEPNP AWLPEGDADI NPSAQYQANV EAANKCDTCL VDHGDGSYSY TFQINIANVT
EPLPVVFDAN NTQRATLELE LPQVTANAHY DWQPASGKTE GIQTRDVVSI ETCYTCHQPE
SLKLHGGRRI DLENCASCHT ATSGDPESGN SVDFTYMIHA IHKGEHRMTY SPTEEKMVQA
PYKVIGYGGG MHDYSKVMYP QGPAADCAAC HVEGAGAPAN ADLFKANLSN TACIACHSEL
PSDTHYKYGA GTDCMSCHIE DGYSRSGAEA HGDVLKAYDT TKGMSVKFSN IGADTNGKFT
FKVQVLDKDG NAVGTEFLDT SSRVVMAWDS DKDYPGYYEG SYSNRRIALK EGTYDATDKS
YTLTASKINL PADANGKTFE LWSALKVCFN NGGYGRPDVV MTDCATDGVR KIEVKDAPLH
FVWKDGGVDD AAKAVMRREI IDSTKCQGCH NQQVYHYDNG VNCQTCHTSD KTTKDDAAYP
GGKKPTSFAY KAHGASGHYL KYAGAQTGTV LKTDCSTCHT DKGITLGRAP DRVWRYGDKD
NGGVDVWVSS DAGACMSCHQ KYMGDAAKAH IETNGGIVDG TSADDVRTRA KESCSTCHTA
EQIRGLHNK