Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1209 |
Symbol | |
ID | 4603461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1484259 |
End bp | 1486448 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780556 |
Product | decaheme cytochrome c |
Protein accession | YP_927086 |
Protein GI | 119774346 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00658895 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.327868 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAC GGTTCAACTT CAATGCCGCG ACAAAAGCGA TATTGGGTGC CGGATTACTG TCTTTAACGC TCGTCGGTTG CGGCAGCGAC GGCAAAGATG GTGAAGACGG CAAAGATGGT GTCATTGGCG TCAGCATTGA CAAAACATCA ACCCTCAAAG CCACCTTTAC CAATGCCAGC ATCGATGCCG GTGTACTGAG CGTTGACTTC ACCCTGGAAA ACGCCAACGG CGTTGCCGTG TTGGGGCTGA CCAAGGATCA CGACCTGCGC TTTGGTATTG CCCAACTCGC CGAAGTGACA GAGACAGTGG GTGAAGGCGA CCAGGCCACC GAAGCCAATC GCGGCTACCA GTGGCAAGCC TACATCAACA GCAAAAAAGA GCCCAATCCA GCCTGGTTGC CAGAGGGCGA TGCCGATATC AATCCCTCAG CTCAGTATCA GGCCAACGTA GAAGCCGCCA ATAAGTGCGA TACCTGCTTG GTTGACCATG GTGACGGCAG CTACAGCTAT ACTTTCCAGA TTAATATCGC CAACGTTACC GAGCCTCTGC CGGTTGTGTT TGACGCCAAT AACACTCAAA GAGCCACCCT GGAGCTGGAA TTGCCCCAGG TCACCGCCAA CGCCCACTAT GACTGGCAGC CTGCCTCCGG CAAAACCGAA GGCATTCAAA CCCGTGATGT GGTCAGTATT GAGACCTGTT ACACCTGCCA CCAACCTGAG AGCCTCAAGC TCCACGGTGG TCGTCGTATC GACCTTGAAA ACTGTGCCTC TTGCCACACT GCCACATCCG GCGATCCTGA GTCAGGCAAC AGTGTCGACT TTACCTATAT GATCCACGCC ATCCATAAAG GCGAACATCG CATGACCTAC TCTCCAACCG AGGAGAAAAT GGTACAGGCG CCATACAAGG TGATTGGATA TGGTGGCGGT ATGCATGACT ACAGCAAGGT CATGTATCCA CAGGGACCCG CCGCGGACTG TGCTGCCTGT CACGTAGAAG GTGCTGGCGC CCCTGCCAAT GCGGATCTCT TTAAAGCCAA CCTCAGCAAC ACCGCCTGTA TTGCGTGTCA CAGCGAGCTG CCGTCCGACA CCCACTACAA GTACGGTGCG GGCACAGACT GTATGAGTTG CCACATCGAA GATGGTTACT CACGCAGCGG CGCCGAAGCG CACGGTGATG TGCTCAAGGC TTATGACACC ACCAAGGGGA TGTCAGTCAA GTTCAGTAAC ATAGGCGCAG ACACTAACGG TAAGTTCACC TTCAAGGTGC AGGTGCTGGA TAAAGACGGC AACGCCGTTG GCACTGAGTT CCTCGACACC AGCAGCCGCG TAGTTATGGC CTGGGACAGC GACAAAGATT ACCCCGGCTA CTATGAAGGC TCCTACAGTA ACCGTCGTAT CGCCTTGAAA GAAGGCACCT ACGATGCCAC TGACAAGAGC TACACCCTGA CGGCCAGCAA GATAAACCTG CCTGCGGATG CCAACGGCAA GACCTTTGAG CTGTGGTCAG CACTGAAGGT GTGCTTCAAC AACGGCGGTT ATGGTCGTCC CGACGTGGTG ATGACTGACT GCGCCACCGA CGGTGTGCGT AAGATTGAAG TGAAAGACGC GCCACTGCAC TTCGTCTGGA AAGACGGTGG CGTGGACGAT GCAGCCAAAG CCGTCATGCG CCGTGAAATT ATCGACTCGA CCAAGTGTCA GGGTTGTCAC AACCAGCAGG TGTATCACTA CGATAACGGT GTGAACTGTC AGACTTGCCA CACCTCTGAC AAGACGACCA AAGATGACGC TGCATACCCA GGTGGCAAGA AGCCAACCAG CTTTGCCTAC AAGGCTCACG GCGCTTCTGG TCACTACCTT AAGTATGCCG GCGCCCAGAC TGGTACTGTA CTCAAGACCG ACTGCAGCAC ATGTCACACC GACAAGGGTA TTACTCTGGG ACGTGCACCT GACCGTGTAT GGCGCTATGG CGACAAGGAC AACGGCGGCG TGGATGTCTG GGTATCTTCC GATGCCGGTG CCTGCATGAG CTGTCACCAG AAGTACATGG GTGACGCGGC CAAGGCACAC ATCGAAACCA ACGGCGGTAT TGTCGATGGT ACCAGTGCTG ATGATGTGCG CACCCGTGCC AAGGAAAGCT GCTCTACCTG CCACACTGCA GAGCAGATAC GTGGACTGCA CAACAAATAA
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Protein sequence | MMKRFNFNAA TKAILGAGLL SLTLVGCGSD GKDGEDGKDG VIGVSIDKTS TLKATFTNAS IDAGVLSVDF TLENANGVAV LGLTKDHDLR FGIAQLAEVT ETVGEGDQAT EANRGYQWQA YINSKKEPNP AWLPEGDADI NPSAQYQANV EAANKCDTCL VDHGDGSYSY TFQINIANVT EPLPVVFDAN NTQRATLELE LPQVTANAHY DWQPASGKTE GIQTRDVVSI ETCYTCHQPE SLKLHGGRRI DLENCASCHT ATSGDPESGN SVDFTYMIHA IHKGEHRMTY SPTEEKMVQA PYKVIGYGGG MHDYSKVMYP QGPAADCAAC HVEGAGAPAN ADLFKANLSN TACIACHSEL PSDTHYKYGA GTDCMSCHIE DGYSRSGAEA HGDVLKAYDT TKGMSVKFSN IGADTNGKFT FKVQVLDKDG NAVGTEFLDT SSRVVMAWDS DKDYPGYYEG SYSNRRIALK EGTYDATDKS YTLTASKINL PADANGKTFE LWSALKVCFN NGGYGRPDVV MTDCATDGVR KIEVKDAPLH FVWKDGGVDD AAKAVMRREI IDSTKCQGCH NQQVYHYDNG VNCQTCHTSD KTTKDDAAYP GGKKPTSFAY KAHGASGHYL KYAGAQTGTV LKTDCSTCHT DKGITLGRAP DRVWRYGDKD NGGVDVWVSS DAGACMSCHQ KYMGDAAKAH IETNGGIVDG TSADDVRTRA KESCSTCHTA EQIRGLHNK
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