Gene Sama_1208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1208 
Symbol 
ID4603460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1481971 
End bp1483941 
Gene Length1971 bp 
Protein Length656 aa 
Translation table11 
GC content56% 
IMG OID639780555 
Productdecaheme cytochrome c 
Protein accessionYP_927085 
Protein GI119774345 
COG category 
COG ID 
TIGRFAM ID[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.474569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.550051 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAACA CACAAAAAAC CAAAATCGCA CTGCTGATAG CAGCCAGCGC CCTGGGCTTA 
ACCGCCTGTG GTGGCAGTGA TGGCAGCGAC GGCAACCCAG GTAACCCGGG CGGAGAGCCT
GCAGGTTCCA TTGCCGAACT GCATTTCACC TTCAACGATA CCCGCATTAA CGACGGTATC
ACCAAGGTCG AATTCACCGT GACCAACGAA GAAGACAAAC CCGTTGTTGG TCTGCAAAAA
ATGCGCTTCT ATGCCGAGCA GCTGCTACCT GAAGGTGCAA CCGGTGCAGG TAACAGCTCC
CAGTGGGAAT ACCTGCTGGA CGAAACCTGT GACCTGCCAG CCGCCAAGTG TCCAGGCACT
TTCGTAGACC ACAAAAATGG TCGCTACAGC TACACCTTCG GTGCCAACCT GGCCGACTCT
ACCCGCTCAG AATACAAGGC TCAGCTGGCC CAGCGTCTGG TGATCCGTAA CTACAACGTG
CCCCTGCCAG ATGGCACCAC AGTGCCCGGC ACCACCGCCC TGACCGACTT TATGGGCGAC
TCAGGTGCTG ATGCCTTCTA CAGCCGCAAA ATTGTTGCCA CCGAAAGCTG TAACGCCTGT
CACGGTGACG TACAGGAAGC TGGCCACATG ACTGGTGATG TTAACTTCTG CGCCAGCTGC
CACACCCCCG GTCGCGTGAG TGAAGGCAAA GAGTTCAACG TCTTCATCCA CGACATCCAC
TTCAACCTGG ATGACGCCGA CAACAAGATT AAACCCGCCT TTGGCGTTGC CGCACTGGAA
AACTGCCAGA GCTGCCACGT TGAGACCGAA GTTGCCCCCG ATTGGGCCAA CTGGACCCGT
ATCCCTACCG CTCAAAGCTG TGGCAGCTGC CACACCAATA TCGACTTTGC CGCCGGGAAA
GGCCACTCCA TGCAGGCCGA TAACAGCAAC TGCGTAGCCT GTCACAACAG CGACTGGACC
GCCGAGCTGC ACACCGCTCA GGGTAAGGCC GCAAAAGAGC TGGTCGCCAA GCTTGGCATG
AGCACCACTC TGGTCGGTAA TGAGGACAAT AGCGCGACGC TGACTCTGGT GATTACCGAT
GCTGCCGGCA ATGCGGTAGA TGCCAATAGC CTGATGACCA AAATCCAGCG TATTGAAACC
ATCACCAACG TGGGCCCTAA CTTCCCCATC ATGGGCTACA ACCCAAGCCC AGGAAATGGT
CAGAAGAAAG TGACCAAAGA TCTGGTGAAG TCAGGCGCAT TGCAAGCCGA TGTGACTGTG
GTTGACGGCA AGCTGGTATA CACCATACCT GCCCTGCCTT TCGGTGCTGG CGATACCAAT
ACCGCCTTTA CCTTCGTTGG TCTGGAAATG TGTGTCAGCG GCACCGAGTT TGTTGACTGT
GGCGACGGTG TTGCTACCCA GTCAATGAAG GCTCAACTGG CCCACGGTAC CAAGGCAGGC
GAGACTGCAA ACTTCCGCCA TATCGACTCG GTGAACTTTG CCAGCTGTCA GGGCTGTCAC
GGTGAAACCT TTGACATTCA CAAGGGCTAT CACGCCGGCT TTATCATGAG TGAGCAGCTG
GGCCGCGAAG TGAACGGTAA GCTGACTGTG GGCGTCGATG CCTGTGTGGC CTGTCACACC
CCTGACGGTA CATATGCCGG TGGCGCCAAC AAAGGTGCGT TCGAGATGAA GCTGCACGTG
GTGCACGGTA AAGAAGGCGT CTTCAACGAC TGCCGTCAGT GTCACAACGA CTTCAACCTG
GATGCCTTCA AGATGAAGGG TGCTCTGGCC ACATCTGCCG GTAAGTACAC CACGCCCATC
ACGGCCACCT GTACCTCTTG CCACAGCCAG GAAAGCATTG GCCACGGTCT GACCAACATG
GGTGCCATCG TCGACGGTGA CTATGTGGAA GCCAACCAGG CGGCGCAGCA GGAAACCTGT
TTCTTCTGTC ACCAGCCAAG TGTTACCGAC CACACTGTGG TGAAAATGTA A
 
Protein sequence
MMNTQKTKIA LLIAASALGL TACGGSDGSD GNPGNPGGEP AGSIAELHFT FNDTRINDGI 
TKVEFTVTNE EDKPVVGLQK MRFYAEQLLP EGATGAGNSS QWEYLLDETC DLPAAKCPGT
FVDHKNGRYS YTFGANLADS TRSEYKAQLA QRLVIRNYNV PLPDGTTVPG TTALTDFMGD
SGADAFYSRK IVATESCNAC HGDVQEAGHM TGDVNFCASC HTPGRVSEGK EFNVFIHDIH
FNLDDADNKI KPAFGVAALE NCQSCHVETE VAPDWANWTR IPTAQSCGSC HTNIDFAAGK
GHSMQADNSN CVACHNSDWT AELHTAQGKA AKELVAKLGM STTLVGNEDN SATLTLVITD
AAGNAVDANS LMTKIQRIET ITNVGPNFPI MGYNPSPGNG QKKVTKDLVK SGALQADVTV
VDGKLVYTIP ALPFGAGDTN TAFTFVGLEM CVSGTEFVDC GDGVATQSMK AQLAHGTKAG
ETANFRHIDS VNFASCQGCH GETFDIHKGY HAGFIMSEQL GREVNGKLTV GVDACVACHT
PDGTYAGGAN KGAFEMKLHV VHGKEGVFND CRQCHNDFNL DAFKMKGALA TSAGKYTTPI
TATCTSCHSQ ESIGHGLTNM GAIVDGDYVE ANQAAQQETC FFCHQPSVTD HTVVKM