| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1192 |
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| Symbol | |
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| ID | 4603444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1459602 |
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| End bp | 1462448 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780539 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_927069 |
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| Protein GI | 119774329 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.458083 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCTT TACGTACCCA AGTCGCCACC CTGGCGCTGG CGGTCAGCAC CGCACTCTGG
ATAACACCTG TGTGCGCGGC CGATGCCGAA CAAACAACCA AGAACACCGA GGAAAAAGCC
AAGCAAGCCG AAGAAGCCAA GGAAGAGGAT GTTGAGCGTA TTGCGGTTTA CGGTATCCGC
TCCAGTATCA AGGAGTCGAT GTTCCTCAAG CAAAACGCCA CCAGCGTGGT GGATTTGGTG
GTGGCCGATG ACATAGGCAA GTTCCCCGAT GAAAACCTGG CCGAAGCGCT GCAGCGTATT
CCCGGGATCA CCATCACCCG TAACGGCGGT GAAGGACAAA ACATTCTGGT GCGCGGCCTG
GGCGCAGGTT ATAACGTCAC CACCCTCAAC GGCCGTAAAC TGGCTTCAGA ATATGCGGGC
CGTGACTTCA ACTTTGATAC CATCGCCTCG GAGCTGGTGA ATGTGCTGGC GGTATACAAG
TCGCCCGAAG CCCGTCTCAC CGAGGGTGGA ATCGGCGCAA TAGTCGATAT TCAAACCCGT
AAGCCGCTGG ATTTGGATGG TTTTACCCTG CAGGCTTCCG CCAAGGGGAT CCACGAGTCA
CGCACAGGTG ACATCCATCC CCATGCATCA TTCATCATTG GCGATCAGAA TGATGACGGC
AGTCTGGGCG CACTCTTCTC TGCCGTATAT TCGAAAAAGA CCCTGAGGGC CGATACCTAT
TCTGCCGACG GATTTTTCGA TGAAGACGAA GGCTGGGGTG TGGACAGTGC CGGGGTGCCC
GTGGATGCCA ACAACAATGG CACCATTGAT GAGGGCGAAA TCTTCGCCTC TAAAATTCCC
AGCTATATGT ACTTTGCCAA CGCCCAGGAC GTCCGTGAGC GCATCGGCTC TACCCTCGCC
CTGCAATGGC GCCCAAGCGA TGACTTGACC CTGAGTCTGG ATGGTCTCTT TTCCCGCTAC
AACACAGATG GTAACCGCTA CCAGATTGGC TTTGTAAACT ACGACGAGTC CTGGACACCG
GGCACGCCGC TGTTTACCGA TGCCCAGTTC GACGACCTGG GCCGAGTGGT CAAGATGAAG
CAAACCGGTG ATAACACCAT GGTGGAGCTG CTGAACATCT CTACCCCGCG CCAGACCGAT
ACCTGGCAGC TGGGCCTGAA TGCCGAGTGG CACCCTACCG ACCAATGGTC TGTATACGCC
GATGCGGCTT ATTCTCAGGC GGAAAACAAG AACAAGGGTG ACAACCGCTT CATAGTGGCA
CGTGGTTTTG TCGATAGCAT CGGCATCGAC TACAGCACAG GTAATACCCT GCCGGATGTG
GTGATAAGCC CGGCCCTGAC CTCTGACCAA ACCTACGGTG CCCACTACAG CTACAACAGC
GGTACCGGGG TAAAAGACAA GGTGAATGAC TTCAAACTCG AAGCCATTTA TGAACCCGAA
GACAGCCTGG TAAGCAAGGT GCACTTTGGG GTGAATTATG TCAAACAGTC CAAGACCCAG
AACGCCTTTG GATCCCGTAA CCCCAGCCAG TTCAGCCGCG GCGGTTTTTA CCTGACCCGC
GATGGTTACG ACTTTGCCCC AGGCCAGGTA TTTACCCAGG GCGAATTTGA ACTGTTCCGC
ATTCCGGAAA ACGTGTTTGT GCCCGCCAAC TTCGATAACT TCCTCGACGG GGAAAACAGC
GTATCGCCAG ACCCCTGGCC AAGCTTTGAC TATGATGCCC TGCTGGCCTT CTACCGCTCC
ATCAATGCCG AGGCCGCCGA CGCCAGCATA GTCGCGACCC AAAGCAAGTC CGGCAGCTAC
GAAGTATCTG AAGCCGTGAC CTCGGCCTTC GTGCAGGTCA CCCTGGAAGA TGAGCTGTGG
GAACTGCCCT ACATGCTGAA CCTCGGCCTG CGTGCCAGCC ACACCCAGGT AGACTCCAGC
GGTTTTGGTT ATGACCTGTC CAAGGTGGTG CTCGACAGCG CCGGTAACCC CACTAATAAC
GACTGGCGTG CTGTCCTGCC TGTGGGTCAT GAAGGCAGTT ACAGCAACGT GCTGCCGAGC
CTGAACTTCC GCCTGAACCT GCAGGACGAT TTGCTGCTGC GCGTCTCTGC CGCCCAAACC
CTGAGCCGTC CATCCCTGTA TGCCCTGCGT ACCTGGGCCA ATCCCGACTT CGTCAACCGC
AAAGAAGGAT TGCCGACCCT GAGCCGTGGT AATCCCGGCG TAAGTGCCGA AGAGGCCTAT
CAGGGCGATG TGACGCTGGA GTGGTACTAC GGTGACAGCA GCTCACTGGC TGCCGGCGTG
TTTGTGAAGG ATATTCAATC CTTTATCGAA AACGATGAAA ACGCCATGGA CGTGGAAGGC
AACCGCTATA TGGTCAACCA GCCTGAGTCA GGCGAGTATG GCGCCCTTAT CACAGGTTAC
GAAGTGGCCT GGCAGCAGTC GCTGGAGCAA TGGCTGCCGT CACCCCTGGA TGGTTTTGGC
GTGCAGCTGA ACTACACCTA TGTGGACAGC GAATATGACG ACCCGGCTCG CAAAGAGCAG
AACCTGCCCT TCGCCGGCAT GTCTGAAAAC TCCTACAACG CGGTGCTCTA CTACGAGAAA
TACGGTTTGC AGGGCCGCTT CGCCTACAAC TGGCGCAGCA AGTTCCTCGT TGACCCGGAA
GCCTGGGGTG GTCCTGCCTG GATCAACGCT TACGGCCAGC TGGATGCCAG CTTAAGCTAT
GCGCTGCTGG AAAACCTGAA TGTGTTTGTT GAAGCCTCCA ACCTCGGCAA TGACCGCTAC
TCTGGCTACA TCAAGCGCCC TGATCAGGTG AACTACCTGG AGCGCTTCGG TACACAGATT
GCCTTCGGTG TCAGGGGCAG TTTCTAA
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| Protein sequence | MSSLRTQVAT LALAVSTALW ITPVCAADAE QTTKNTEEKA KQAEEAKEED VERIAVYGIR
SSIKESMFLK QNATSVVDLV VADDIGKFPD ENLAEALQRI PGITITRNGG EGQNILVRGL
GAGYNVTTLN GRKLASEYAG RDFNFDTIAS ELVNVLAVYK SPEARLTEGG IGAIVDIQTR
KPLDLDGFTL QASAKGIHES RTGDIHPHAS FIIGDQNDDG SLGALFSAVY SKKTLRADTY
SADGFFDEDE GWGVDSAGVP VDANNNGTID EGEIFASKIP SYMYFANAQD VRERIGSTLA
LQWRPSDDLT LSLDGLFSRY NTDGNRYQIG FVNYDESWTP GTPLFTDAQF DDLGRVVKMK
QTGDNTMVEL LNISTPRQTD TWQLGLNAEW HPTDQWSVYA DAAYSQAENK NKGDNRFIVA
RGFVDSIGID YSTGNTLPDV VISPALTSDQ TYGAHYSYNS GTGVKDKVND FKLEAIYEPE
DSLVSKVHFG VNYVKQSKTQ NAFGSRNPSQ FSRGGFYLTR DGYDFAPGQV FTQGEFELFR
IPENVFVPAN FDNFLDGENS VSPDPWPSFD YDALLAFYRS INAEAADASI VATQSKSGSY
EVSEAVTSAF VQVTLEDELW ELPYMLNLGL RASHTQVDSS GFGYDLSKVV LDSAGNPTNN
DWRAVLPVGH EGSYSNVLPS LNFRLNLQDD LLLRVSAAQT LSRPSLYALR TWANPDFVNR
KEGLPTLSRG NPGVSAEEAY QGDVTLEWYY GDSSSLAAGV FVKDIQSFIE NDENAMDVEG
NRYMVNQPES GEYGALITGY EVAWQQSLEQ WLPSPLDGFG VQLNYTYVDS EYDDPARKEQ
NLPFAGMSEN SYNAVLYYEK YGLQGRFAYN WRSKFLVDPE AWGGPAWINA YGQLDASLSY
ALLENLNVFV EASNLGNDRY SGYIKRPDQV NYLERFGTQI AFGVRGSF
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