Gene Sama_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1178 
Symbol 
ID4603430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1439543 
End bp1440259 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content55% 
IMG OID639780525 
ProductBeta-lactamase 
Protein accessionYP_927055 
Protein GI119774315 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.188267 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGATTG CAATAAGCTG GTGTACTGCG TTGATGATAG GGACTATTGC CAATACGCAG 
GCACTGGAAA TCACGCCCTT GTCTGATGGG CTTTTCCTGC ACCAGAGCGA GAAAGAAGTC
GAAGGCTTTG GCAAAGTCTC CGCCAATGGT CTGATAATCG TGGATGGCAA AGAGGCGTTT
GTGGTGGATA CGCCCTGGAC GGATGCCGAT GCAGAGGCCT TGCTCGAATG GACAAAGGCT
AAAGACTTAA CCGTAAAAGC CGTGCTCGCC ACCCATTGGC ATGAAGACAG GGCCGGCAGC
TTTGGGGTAT TTGAGAGAGC CGGTATCGCC ACCCTAAGCT CTGAGGCGAC CCAGGCCCTT
TTGAGGCAAC ATCAAAAGAC GCTGGCGACC CACACCTTCA GTGGCGACGA AATACAGTAT
TTTGGCAACA AGGTAGAGGT GTTTTATCCC GGTGCTGGCC ATGCGATGGA TAATCTGGTG
GTGTACCTGC CTCACGAAAA GCTGCTCTTT GGCGGCTGCC TGGTGCGGGA GGCGTCAACC
CGGTTTATGG GGTTTTATGG CGATGGCTCA TTGCCTGACT GGCCTGAGTC CATGTCGCGG
CTGATAGCGA AATTCCCTGA AGTCATCACA GTGGTGCCGG GCCATGGCGC GCTGGGGGAT
AAGCGCCTGC TTGAACACAC AAGGGGGCTG GCAGAGGCCG CGCTCAAGGC ACAATAA
 
Protein sequence
MRIAISWCTA LMIGTIANTQ ALEITPLSDG LFLHQSEKEV EGFGKVSANG LIIVDGKEAF 
VVDTPWTDAD AEALLEWTKA KDLTVKAVLA THWHEDRAGS FGVFERAGIA TLSSEATQAL
LRQHQKTLAT HTFSGDEIQY FGNKVEVFYP GAGHAMDNLV VYLPHEKLLF GGCLVREAST
RFMGFYGDGS LPDWPESMSR LIAKFPEVIT VVPGHGALGD KRLLEHTRGL AEAALKAQ