| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1175 |
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| Symbol | |
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| ID | 4603427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1435364 |
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| End bp | 1437340 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780522 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_927052 |
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| Protein GI | 119774312 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0833615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTCA AATACAGTAT TAATCGGCCG GTTTTTTTCG GTTCTCTTTT TCTTATCACC
CTCCTGGTGG CGCTCGGTGC CATCTGGCCG CAGCAGGCTC AACAATGGTT TGGTGCAGTG
CAGCATTGGC TTGAAGTCAA AGCTGGCTGG CTTTATGTGC TCGGTGTGGC CGTCTTTCTG
GTTTTTATTG TCTTTGTGAT GGTCAGCCGT TTCGGTGATA TCAAGCTTGG TCCCGATCAT
GCCGAGCCCG ACTACAGCTA TAAGAGCTGG ATAGCCATGC TGTTTTCGGC TGGCATGGGG
ATAGGGCTCA TGTTTTTCGG GGTGGCAGAG CCTGTTATGC ACCTGATAGC CCCGCCGGAT
GCTACGCCCG AGTCAATAGA GGCCGCCAGG CAGGCGATGA AAATTACCTT CTTTCACTGG
GGCATTCATG CCTGGGCCAT CTATGCTGTG GTGGCATTGA GTCTGGCTTA CTTCGCCTAT
CGGCATAAGT TACCGCTGCT GCCAAGAAGC GCGCTTTATC CCTTGATTGG CGAGCGTATT
CACGGACCGA TTGGCCATGC GGTGGATGCG TTTGCCGTGC TGGGCACCAT GTTTGGTGTT
GCCACATCGC TGGGTTTTGG TGTGTTGCAG GTGAATGCCG GGCTTAATTT TCTTTTCGGT
GACCAGTTTC CGGTCAGTAC CCCCCTGCAG GTGGGGCTCA TTGCGGTCAT TACCCTGATT
GCCACAGTGT CTGTGTTCTC CGGGCTTGAT AAAGGGGTTA AGCGCCTCAG CGAGCTCAAT
CTGCTGTTGG CGGTGGTATT GATGCTGGTC GTGCTGCTGG TGGGGCCTAC TGTGGCGCTG
CTGCAGGCCA TTGTACAAAA CACTGGTGCT TATTTCTCTG ATATTGTTGG CAAAACATTT
AATCTATACG CCTATCAGCA GAAAAACGAC TGGCTGGGCG GTTGGACCTT ACTTTACTGG
GGGTGGTGGA TTTCCTGGTC GCCTTTTGTG GGCACCTTTA TTGCGCGGGT CTCCCGTGGC
CGCACTATTC GTGAGTTTCT GCTGGGGGTG CTCTTTGTGC CCAGTGGCTT TACCTTTTTG
TGGATGACAG TATTTGGCAA CTCGGCCATA GACCAGATTT TGCATCAGGG TAATACAGTG
CTCGCCGATG CCGTATCCAG CGACGTGTCT GTGGCGCTGT TTGTGTTCTT CCAGCAGTTG
CCGCTCACAT CCTTGCTCTC GGCGGTGGCC CTGTGTCTGG TGGTCACCTT CTTTGTGACA
TCTTCCGATT CCGGCAGTCT GGTGATTGAT AACCTCACTT CCGGTGGCGA TATGTCGTCC
CCTGTATGGC AGCGCGTGTT TTGGGCGCTG ATGCAGGGCG TAGTGGCTTC TGTGCTCTTG
CTGGCTGGCG GCTTGCAGGC ACTGCAAACC GCTGCCATTG CCAGCGCCAT GCCCTTTTTG
TTAGTGATGT TGCTGATTTG CCTTGGGCTT TTTAAGGCAC TGCAGGATGA CTGGCTTAAG
CTATCCAGTG TGCAGTTGCA TCACACCAGT GTGCAGTATG CCAGTGCCAA CGTTGAATGG
CGGGAGCGTC TGAAAGTGTT GGTGAATCAA CCTTCCGCCA AAGATGCCCG GGCCTTTATC
CGCGGGCCTG CCCGCCAGGC GTTGAAGCAA GTGGCTTCTG CCTTCGTGAA TGAAGGTATT
GATGCCCGCG TGGTGCAGCA AGAGGACAGG GTCAGGCTGC TGATTGCCAG CGACAATCAT
CCCGACTTCG TTTATGGTCT GCGGCTGCGG CAGTATTCTA AAGTGCCGGT CCATGGTGTG
GAGGAGACCG ACGATGACTT TTACCGGGTG GAAGTGTTTT TGGAGCACGG TGGACAGCAT
TATGATGTGC TTGGCTACAC AGTTGAGCAG TTGCAGGCCG ATGCAGTAAC TCAGTATGAA
AAATATCTGC ACTATCTGCA TTTATCCGTG AGTGAAGCGG TTAACCCGGA TAGCTGA
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| Protein sequence | MALKYSINRP VFFGSLFLIT LLVALGAIWP QQAQQWFGAV QHWLEVKAGW LYVLGVAVFL
VFIVFVMVSR FGDIKLGPDH AEPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHLIAPPD
ATPESIEAAR QAMKITFFHW GIHAWAIYAV VALSLAYFAY RHKLPLLPRS ALYPLIGERI
HGPIGHAVDA FAVLGTMFGV ATSLGFGVLQ VNAGLNFLFG DQFPVSTPLQ VGLIAVITLI
ATVSVFSGLD KGVKRLSELN LLLAVVLMLV VLLVGPTVAL LQAIVQNTGA YFSDIVGKTF
NLYAYQQKND WLGGWTLLYW GWWISWSPFV GTFIARVSRG RTIREFLLGV LFVPSGFTFL
WMTVFGNSAI DQILHQGNTV LADAVSSDVS VALFVFFQQL PLTSLLSAVA LCLVVTFFVT
SSDSGSLVID NLTSGGDMSS PVWQRVFWAL MQGVVASVLL LAGGLQALQT AAIASAMPFL
LVMLLICLGL FKALQDDWLK LSSVQLHHTS VQYASANVEW RERLKVLVNQ PSAKDARAFI
RGPARQALKQ VASAFVNEGI DARVVQQEDR VRLLIASDNH PDFVYGLRLR QYSKVPVHGV
EETDDDFYRV EVFLEHGGQH YDVLGYTVEQ LQADAVTQYE KYLHYLHLSV SEAVNPDS
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