| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1174 |
|---|
| Symbol | |
|---|
| ID | 4603426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1433642 |
|---|
| End bp | 1435009 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639780521 |
|---|
| Product | glutamate--ammonia ligase |
|---|
| Protein accession | YP_927051 |
|---|
| Protein GI | 119774311 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0174] Glutamine synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.189992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTTG CCAATCCACA GGAAGCGATA GACTTTCTTG ATAAACATCC CCAGGTTCAG
CACGTCGAAG TCTTCATCAT CGACCCCAAT GGCATTCCCC GGGGCAAACT CCTGCACCGT
CAGGAAGTGC TGTCTATGTA TCGTCACGGC CGTCCTCTGC CCAGCACTAT TTTGGGACTG
ACGGTTCAGG GGGACGATGT AGAAGATACC GGTCTGGTTT GGGAAGTCGG TGACGCCGAC
TGCCTGGCGT TTCCCATCGA AGGCGGTTTG CTGATGCAGC CATGGCGTGC TCAGCCCACC
GCTCAGGTGC ATCTCACCAT GCACCCCGAG GCGGGTATGC CCGCTGCTGT GGCCGATCCC
CGCCTGGTGC TTTCCAAAGT AATAGATTCC CTGCAAGCCG ATGGTTTTTA TCCGGTAATG
GCAGCAGAGT TGGAGTTTTT CCTGCTGGAT CAGCGTTTCG ATGCCAATGG CAGACCCCAG
CCAGCAATGC AAAGCGATGG CCACAGACCC CACCAAACTC AGGTGTATGG CATTTTGGAG
TTGGAGCGAC TGCAGCCCTT CCTGGACGAT CTTTACCACG CCTGTGAGGT GCAGGGCATT
CCTGCGCGCA CCGCCATTTC CGAGTATGCG CCCGGCCAGG TAGAAATCAC CCTCGAGCAC
AGATTCGACG CGCTTCAGGC CATGGATGAA GCGGTTCGCT ACAAGCGACT GGTCAAGGGG
GTGGCCGCAA AACATGGTAT GCAGGCCTGC TTCATGGCTA AACCCTTTGG TGAGTTGGCA
GGCAGCGGCA TGCATATGCA CGTCAGCCTG GCCGACGCCG ATGGCAACAA CCGGTTTGCC
AGTGACAACC CCGAAGGTAC ACCAGAGTTG ACCCAATCCA TCGCCGGCAT GATGGCGACC
CTGGAAGATG CCCAGTTGCT GTTTTGCCCC AATGCCAACT CCTTCCGCCG CTTTCAAAGC
GCAAGCTACG CCCCAATCGC CAAGACCTGG GGCGTGAACA ACCGAACCGT TTCATTCAGG
GTACCCGGTG GCCCGGCGCC CAGTCGCCAT GTGGAACATC GCATCTGTGG CGCAGACGCC
AATCCTTATC TGGCGGCAGC GGCGATATTG GCGGCATGCC ATCATGGTAT CCGCAATCAG
TTGTCACCCG GTCAGGCGAT TGTCGGCAAC GGCTACGAAG GCAAACATCA AACCCTGCCC
ACCGACTGGC TGTCGGCACT GACCAACTTC GAGCGCTCCG AGTGGATGAA GTCAGTATTG
GGTGAGGATT TCCACCGTAT TTACGGCAGA ATTAAGCGCG CCGAGTACCA GGAGTTTATG
GCCGAGGTTG GCCAGCAGGA CTGGCACTGG TACTTAACCC ACGCCTGA
|
|---|
| Protein sequence | MPFANPQEAI DFLDKHPQVQ HVEVFIIDPN GIPRGKLLHR QEVLSMYRHG RPLPSTILGL
TVQGDDVEDT GLVWEVGDAD CLAFPIEGGL LMQPWRAQPT AQVHLTMHPE AGMPAAVADP
RLVLSKVIDS LQADGFYPVM AAELEFFLLD QRFDANGRPQ PAMQSDGHRP HQTQVYGILE
LERLQPFLDD LYHACEVQGI PARTAISEYA PGQVEITLEH RFDALQAMDE AVRYKRLVKG
VAAKHGMQAC FMAKPFGELA GSGMHMHVSL ADADGNNRFA SDNPEGTPEL TQSIAGMMAT
LEDAQLLFCP NANSFRRFQS ASYAPIAKTW GVNNRTVSFR VPGGPAPSRH VEHRICGADA
NPYLAAAAIL AACHHGIRNQ LSPGQAIVGN GYEGKHQTLP TDWLSALTNF ERSEWMKSVL
GEDFHRIYGR IKRAEYQEFM AEVGQQDWHW YLTHA
|
|---|
| |