Gene Sama_1168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1168 
Symbol 
ID4603420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1425587 
End bp1425979 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content50% 
IMG OID639780515 
ProductH-NS family DNA-binding protein 
Protein accessionYP_927045 
Protein GI119774305 
COG category[R] General function prediction only 
COG ID[COG2916] DNA-binding protein H-NS 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.827071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAT TCCTCGAAAT TTTGACCCAC GGTCGTCGTC TGAAAGCAGC TGTTAAAGAT 
TTGTCTTTGG ATGAGCTGCG TGATCTTGGC GCCAAACTCG AAAAAATCAT TGTTGAGCGC
GAAGCCGAAG CCGAAGAAGA ATTGAAAGCC AACGCCGAGC GTATTGCTAA AATTGAAGAA
ATCCGCAAGC AAATGGCCGA AATCGGTCTG TCTGTTGAAG ATTTGGGCGT GACTGCAGCA
AAACCAGCCG CGAAGAAGCG CGCTCCCCGT CCACCAAAAT ATAAGATTGT GGTTGACGGT
GAAGAAATCA CCTGGACCGG TCAGGGCCGC ATGCCAACGG TATTCAAGAA CGCCGTTGAA
GGTGGCGCGT CCATGGATGA CTTCCTCATC TAA
 
Protein sequence
MSEFLEILTH GRRLKAAVKD LSLDELRDLG AKLEKIIVER EAEAEEELKA NAERIAKIEE 
IRKQMAEIGL SVEDLGVTAA KPAAKKRAPR PPKYKIVVDG EEITWTGQGR MPTVFKNAVE
GGASMDDFLI