| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1164 |
|---|
| Symbol | |
|---|
| ID | 4603416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1419926 |
|---|
| End bp | 1420663 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780511 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927041 |
|---|
| Protein GI | 119774301 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1720] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00104] probable methyltransferase, YaeB/AF_0241 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCT TTGAAAATAC CATTCAAGCC GTGGCCGTTT GCCATACTCC GTACCGGCAA
AAATTCGGTA TCCCACGGCA ACCCGGACTG GTCAATGCCC ACGGGTTTGT TGAGCTGTTA
CCCCCTTTTA ACGACCCGGA CACTGTGCGT GGGCTTGAGC AATACTCCCA TCTGTGGCTG
CTGTTTTGCT TTCACGAAAA TCTGGCCCAG GGTTGGAAAA ATACCGTGCG GCCACCGCGC
CTTGGCGGCA ATGAAAAGCT GGGTGTCTTT GCCACCCGCT CCACCTTTCG TCCCAATGGC
ATAGGTCAAT CTGTGGTGCG ACTGCATGGC ATAGTCAAAC GCAAAGGGAA ATTGTGTCTT
GAAATCAGTG GGATGGATTT ACTGGATGGC ACCCCCATCA TAGATATCAA GCCCTATATT
CCCTTCTCTG ATGCCATTGC AGACGCCCGT GGCGGCATTG CGCAGGACGC CCCTGTACTG
ATTGAAGTCA GCTACAGCGA GCTTGCCACT TTGCAAATCG CCACCCTCGG CCAGGACGAT
GCCCGGCCGG ATTTGGCAGC GCTGATTGAC GGTGTCTTGG CCCAGGACCC ACGCCCGGCG
TACAAAAAGG CCAAAGAAGA TCCCAAGTTG TATCAGGTCG CCCTGTACGA TCTGGACATA
TTCTGGTGTA TTCAGGATGG CAAGGCCCAT GTGCTTGAGC TTAAACCCAC CAAGGTTGGC
GCACCCCATG ACGGCTGA
|
|---|
| Protein sequence | MKAFENTIQA VAVCHTPYRQ KFGIPRQPGL VNAHGFVELL PPFNDPDTVR GLEQYSHLWL
LFCFHENLAQ GWKNTVRPPR LGGNEKLGVF ATRSTFRPNG IGQSVVRLHG IVKRKGKLCL
EISGMDLLDG TPIIDIKPYI PFSDAIADAR GGIAQDAPVL IEVSYSELAT LQIATLGQDD
ARPDLAALID GVLAQDPRPA YKKAKEDPKL YQVALYDLDI FWCIQDGKAH VLELKPTKVG
APHDG
|
|---|
| |