| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1161 |
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| Symbol | |
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| ID | 4603413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1416155 |
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| End bp | 1417873 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780508 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_927038 |
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| Protein GI | 119774298 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGTCA GCAAATACCT GCTATCGACA CAGAAAGAAA CCCCAGCCAA TGCCGAGGTA
GTCAGTCATC AACTCATGCT GCGTGCGGGC ATGATCCGCC GCAATGCGTC AGGCCTTTAC
AGCTACCTGC CCACAGGTTT GCGGGTACTG CGCAAAGTAG AAGCTATTGT TCGCGAAGAA
ATGAACAAGG CTGGCGCCAT TGAGATCCTG ATGCCCATGG TGCAGCCGGG TGATTTGTGG
GTCGAAACAG GTCGTTGGGA TCAGTTTGGT CCCGAGCTTT TGCGCTTTAC CGACCGCCAC
AACCGCGACT TCGTGCTGGG CCCAACCCAC GAAGAAGTGA TCACTGACCT TATCCGTAAA
GAAGTAAGCT CGTACAAGCA GCTGCCGCTG AACCTGTATC AGATCCAGAC CAAGTTCCGT
GACGAAGTGC GCCCCCGTTT CGGTGTGATG CGCTCACGGG AATTCCTGAT GAAGGATGCC
TACTCCTTCC ACCTGACACA GGAGACTCTG GACGAAACCT ATCAGGCCAT GTATACCGCC
TACAGTAACA TCTTCAGCCG TATGGGTCTG GCATTCCGCC CCGTGCTGGC CGATACCGGC
TCCATCGGTG GCAGCGTGTC CCACGAATTC CACGTACTGG CCCAGAGCGG TGAAGACCTG
ATTGCCTACT CCACCGGCAG CGATTACGCC GCCAACATCG AGAAGGCCGA AGCGCCCCTG
CCCACCGAGC CTCGCGGCGA AGCAACCGAA GCGCTGCGCA CCGTGGACAC CCCCAATGCC
AAAACCATCG CCGAGTTGGT TGAGCAGTTT GGCGTGGCCA TCGAAAAGAC CATCAAGACT
TTGATTGTTA AAGGCGCCAC CGAAGAAGCC CCTCTGGTTG CTCTGCTGGT TCGTGGCGAC
CACGAACTGA ACGAAATCAA GGCCGACAAG CTGGAACTGG TGGCCTCGCC GCTGGAATTT
GCCGGTGAAG CTGAAATCCG CGCCGCCGTG GGTGCTGGTA CCGGCTCTAT CGGTCCGGTT
AACCTCAAGA TGCCTATCAT TGCTGACCAC AGCGTACTGG TAATGAGCGA CTTCGCCGCC
GGTGCCAACG AAGATGGCAA GCACTTCTTC GGTATCAACT GGGAGCGCGA TCTGCCGCTG
GTTCAGGGCG CCGACATCCG CAACGTCGTA GAAGGCGAAG CCACACCCGA TGGCAAGGGC
ACCTATGCCT TTGCCCGCGG TATCGAAGTG GGTCACATCT TCCAACTGGG TAACAAGTAC
TCAGAAGCCA TGAACGCCAC CGTACTTGAT GAAAACGGCA AGTCACAGAT CATGCTGATG
GGCTGTTATG GTGTGGGCGT GAGCCGTATC GTGGCCGCTG CCATCGAGCA GAACAATGAC
GAGCGCGGCA TTGTATGGCC TGAGGCCATT GCCCCGTTCA CCGTTGGCAT TTTGCCGATG
AACATGCACA AGTCTCATCG GGTTACCGAT ACCGCTGAAG CCCTGTACAA AGAACTGACC
GAAGCCGGTT TCGAAGTACT GTTTGACGAC CGTAAAGAGC GCCCTGGCGT GATGTTTGCC
GATATGGAGC TGCTGGGCAT ACCTCACACT GTGGTCATAG GCGATCGCAA CATAGACACA
GGTGTCTATG AGTACAAGAA TCGCCGCACC GGTGAAAAGA CCGAAGTGCC TTTTGCAGAG
CTGGTGAGCT TCCTCAAAGC CCAGTTTCAG CAAGGCTAA
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| Protein sequence | MRVSKYLLST QKETPANAEV VSHQLMLRAG MIRRNASGLY SYLPTGLRVL RKVEAIVREE
MNKAGAIEIL MPMVQPGDLW VETGRWDQFG PELLRFTDRH NRDFVLGPTH EEVITDLIRK
EVSSYKQLPL NLYQIQTKFR DEVRPRFGVM RSREFLMKDA YSFHLTQETL DETYQAMYTA
YSNIFSRMGL AFRPVLADTG SIGGSVSHEF HVLAQSGEDL IAYSTGSDYA ANIEKAEAPL
PTEPRGEATE ALRTVDTPNA KTIAELVEQF GVAIEKTIKT LIVKGATEEA PLVALLVRGD
HELNEIKADK LELVASPLEF AGEAEIRAAV GAGTGSIGPV NLKMPIIADH SVLVMSDFAA
GANEDGKHFF GINWERDLPL VQGADIRNVV EGEATPDGKG TYAFARGIEV GHIFQLGNKY
SEAMNATVLD ENGKSQIMLM GCYGVGVSRI VAAAIEQNND ERGIVWPEAI APFTVGILPM
NMHKSHRVTD TAEALYKELT EAGFEVLFDD RKERPGVMFA DMELLGIPHT VVIGDRNIDT
GVYEYKNRRT GEKTEVPFAE LVSFLKAQFQ QG
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