| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1158 |
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| Symbol | |
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| ID | 4603410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1411827 |
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| End bp | 1412738 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780505 |
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| Product | GGDEF family protein |
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| Protein accession | YP_927035 |
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| Protein GI | 119774295 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACTTTG GTATTGCCGC ACAAGTCTAT CCCGATGATT ACCACTTTGG CCGCAGCGCC
ACCGTGGTCG ACATCCACGA TGGCCCCGAT CAGCTTGCAC TGATCAACAT AGTTCAGCAG
CTCCATGCGA GCCTGGATCC AAGGACCGTT TTTGCCTGTT TTGGCAAAGT CCTGGGCCAG
TATTTGCCGC TTGCCGGCAT TCAGGCGCAA TTTGCCGAAA TGCAGCTCAG CTGGGGAAAG
CGCATTGGGG TGAGTTTGAA ACGGCATCTC AACAACGAGA TCTGCCGCAG TGCTGTGCTG
GATTACCGTC TCGATGCGCC GCTGACACCG GCGCAAATTC GCGTTTTGCA AACGCTGGAG
TCCATGTTGG TCCAACCGCT GCTCAATGCG ATTCAGTACC AAAAGATGTC TGAGCAGGCG
ATGTTTGATA CCCTGACAGG CCTTGGAAAC CGTAACTTTT ACGGCCAGGC CATCAAGCAT
GCGGTGGCAA GGGCGAGCCG TCATCAGGAC AAGTTATCCC TGATAGTCCT GGACCTGGAC
AACTTCAAAC AGCTCAATGA TACCCACGGC CACCAGTTCG GTGATGCCGT GCTCCGTCAA
TTCGGCGCGC TTATCAAGTC GGCTATCCGC AATACCGATC AGGCCTTCCG CATTGGCGGC
GATGAATTTG TGGTGTTGGT GCGGGGCGAG CTGGACTCGG CGACCTTGCT GTGCGAGCGC
ATATTAAGCA AACTGGCCAA AGGCAGTTTC TTTTACCGAA ACCGGATACA CACCAGCCTT
GGCGCTGCAG AGATCCAGGC GGGAGAAAAC CAGGATAATC TCTACGAACG GGCCGACAAG
GCCTTGTATC AAGCCAAGGC CGCCGGCCGC AATTGCTATC GCCTCAGTCT TCAACACCCT
GTCAAAGGCT GA
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| Protein sequence | MDFGIAAQVY PDDYHFGRSA TVVDIHDGPD QLALINIVQQ LHASLDPRTV FACFGKVLGQ
YLPLAGIQAQ FAEMQLSWGK RIGVSLKRHL NNEICRSAVL DYRLDAPLTP AQIRVLQTLE
SMLVQPLLNA IQYQKMSEQA MFDTLTGLGN RNFYGQAIKH AVARASRHQD KLSLIVLDLD
NFKQLNDTHG HQFGDAVLRQ FGALIKSAIR NTDQAFRIGG DEFVVLVRGE LDSATLLCER
ILSKLAKGSF FYRNRIHTSL GAAEIQAGEN QDNLYERADK ALYQAKAAGR NCYRLSLQHP
VKG
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