| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1154 |
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| Symbol | dnaE |
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| ID | 4603406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1404117 |
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| End bp | 1407590 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780501 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_927031 |
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| Protein GI | 119774291 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAAC CCCGTTTTGT TCATCTGCGC GTTCACTCAG ATTTTTCCAT GACCGATGGT
CTGGCAAAGG TTAAGCCCAT TCTTGGCAAG GCCGAGGCCG AGGGCATGGC GGCAATCGCG
CTGACGGATC AGAACAATCT CTGTGGTCTG GTGAAGTTTT ACAGTACCTG CCATGACAAA
GGGATAAAGC CCATTATTGG TGCCGACTTC TGGATGCTGG TGCCCGGGTT TGAAGACGAG
TTTTGTGCCG TCACAGTGCT GGCGATGGAT AACGAGGGTT ATCAAAACCT GACTCAGCTT
ATCAGTCAGG CGTATCTGCG TGGCCAGGTT CAGGGTAGGG TGGCAATCGA TCAGGAATGG
CTGCTGACAT ACAACAGTGG CATTTTGCTG CTCTCCGGCG CCAAAGAAGG GGACCTGGGT
AAGGCGCTGA TCAAGGGCAA CGCCGCGCAG GCGGCCAGCT TAACGCAGTT TTATCAGAAG
CATTTTCCAG ACCGTTATTT TATCGAACTT ATCCGCACCG GCCGTGCCGA CGAAGAAACC
TATCTGCACA TGGCAGTAAA GCATGCTGCC GAGGTCGGGC TGCCCGTGGT GGCCACCAAT
CAGGTGGTGT TTTTGAGTCC GGAAGACTTT GAAGCCCACG AAATCCGGGT CGCTATTCAC
GATGGTTTTA CCCTGGCTGA CAATCGCCGC CCCAAAAAAT ACAGTGAACA GCAGTATCTT
CGCAGTGAAG ATGAAATGTG CGAGCTGTTT TCCGATATTC CCGAGGCCAT TGAGAACACG
GTAGAGATCG CCAAGCGCTG TAACGTGACC GTGCGCCTCG GTGAATACTT CCTGCCTAAC
TTCCCCACGG GCGAGCTGTC CACCGCCGAT TTTCTGGTTG AACGATCCAA AGAGGGCCTT
GAAGAGAGGC TGGAGTTTTT GTTCCCCGAT CCCGCCGAAC GGGCCGAGAA ACGTAAGGAA
TACGATGAGC GTCTGGACAT CGAGCTTCAG GTAATTAACC AGATGGGCTT TCCGGGCTAC
TTCCTTATCG TAATGGAGTT TATCCAGTGG GGTAAGGATA ACGGCATTCC GGTAGGGCCG
GGCCGGGGCT CCGGTGCCGG TTCCCTGGTC GCCTATGCCC TCAAAATTAC CGACCTTGAC
CCGCTGGAAT TTGACCTGCT GTTCGAACGC TTTTTGAACC CTGAGCGGGT TTCCATGCCC
GACTTCGACG TTGACTTCTG CATGGACAGA CGCGACGAGG TGATTGACCA CGTGGCCGAG
CTTTACGGCC GCGAGGCGGT CTCGCAGATC ATTACCTTCG GTACCATGGC GGCCAAAGCG
GTAGTGCGCG ACGTTGGTCG GGTGCTGGGT CACTCCTATG GTTTTGTTGA CCGTATCTCC
AAGATGATCC CGCCTGAGCC GGGCATGACC CTGGCCAAAG CCTTCGAGGT GGAACCCGGT
CTTCAGGAGG CCTACGACGC CGATGAGGAA GTAAAAGACC TTATTGATAT GGCGCGTAAG
CTTGAGGGCG TGACCCGAAA CGCAGGTAAA CACGCAGGTG GCGTGGTAAT TGCGCCCACC
AAAATCACCG ACTTCTCACC GCTGTATTGC GACGCCGAGG GCAAAAACCC GGTTACCCAG
TTCGACAAGA ACGATGTGGA ATACGCCGGA CTGGTAAAGT TCGACTTTTT GGGCCTGCGA
ACCCTCACTA TTATCGACTG GGCACTGGGG ATGATTAACC CAAGGCTGGC CAAGCTGGGT
AAGCCGCCGG TGGATATTGC CGCCATTCCG CTGGATGACA GCAAGTCATT TAGCGTGCTC
AAACGCTATG AGACCACGGC GGTATTCCAG CTCGAATCCC GCGGCATGAA GGACCTTATC
AAGCGTCTGC AACCCGACTG CTTCGAAGAT ATGATTGCAC TGGTGGCCCT GTTCCGTCCG
GGCCCATTGC AATCGGGCAT GGTAGATAAC TTTATTGATC GTAAGCACGG TCACGAAGAG
ATTTCGTACC CGGATGCCAC CTGGCAGCAC GAGAGCCTCA AACCGATTCT GGAGCCCACC
TACGGCATCA TCCTCTACCA GGAGCAGGTG ATGCAGATTG CCCAGACGCT GGCGGGCTAT
ACCCTGGGTG GCGCCGACAT GCTGCGCCGG GCCATGGGTA AGAAAAAGCC TGAAGAGATG
GCCAAGCAAC GGGCAGGCTT TGAGGCCGGC TCGGTGAAAA ATGGCGTGGA TGGCGAGCTG
GCCATGAAGA TCTTCGATCT GGTGGAAAAG TTCGCCGGTT ACGGCTTCAA CAAATCGCAC
TCGGCCGCCT ACGCTCTGGT GTCCTATCAG ACGTTGTGGC TCAAAACCCA CTTCCCGTCC
GAGTTTATGG CGGCGGTGAT GTCGGCAGAT ATGGACAACA CTGACAAGAT TGTGACCCTG
GTGGATGAAT GCGATCGCAT GGGGCTTAAA ATCATTCCGC CGGATGTGAA CAAGGGCCTG
TTCAAGTTCA CCGTGGATGA AGACCTCAAC ATCGTTTACG GTATCGGCGC CATCAAGGGC
GTGGGTGAGG GGCCGGTGGA GGCCATTCTT GAGGCCCGTA AAGATGGCCC CTTCACCGAC
TTGTTCGACT TTTGCGCCCG TATCGACTTG AAAAAGCTCA ACAAGCGGGT GATTGAAAAG
CTGATTTACT CCGGGGCGCT GGATAGCCTC GGGCCGCACC GGGCCTCCAT GATGGCGACC
CTACCGGAGG CCATGCAGGC GGCAGATCAA CACGCCAAGG CCCAAGCCAC AGGCCAGCAC
GATATGTTTG GTCTCCTGAA TGATGATCAA CAAGACGAGA AGCAGCAATT TGTTGAGTGC
ACTCCATGGC CGGACAAAAT TTGGCTCGAA GGCGAGCGTG AAACCCTGGG GCTGTATCTC
ACCGGTCATC CCATCAATCA GTATCTGAAA GAGCTGAAAA ACTACACCTC CGGCAGGCTA
AAGGATATTC ACCCCACCGA GCGGGGCAAA ACCGTCAAGG CCGCTGGTCT GGTTGTGGCA
AGCCGGGTGA TGCTTACCAA ACGGGGCTCC AAAATGGGGC TGCTGACGCT GGATGACAAG
AGTGCCCGCC TGGAGGTGAT GCTCTTTACT GAAGCCTTTG AAAAGTTTGG TCATTTGCTC
GAGAAAGACC GCATTCTTAT CTGCGAAGGG GAAGTGAGCT TCGATGACTT CTCCGGCGGC
AACCGCATGA CCGCCCGTAA TATTATTGAT ATCAGCGAGG CTCGCAGCCA TTTTGCCAAG
GCGCTTGAGG TCGATTTGGC GTCACAGCAG GCCACAGAGG CAATGCTGGA CAAGTTTTTT
GACGTGATTA CGCCCTGGAA GGGCGGCGCT GTTCCCCTGA TTGTGAACTT CAGCCGCGCT
GATGCCAGCG GCCGCTTGCA ATTGGGTGAC GACTGGCGGG TTGACCCGTC TGACGACCTG
GTACTGGCAC TGCAAACCCT GATAGGCCCC GATAAAATTC GGATCCAGTT CTAG
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| Protein sequence | MSQPRFVHLR VHSDFSMTDG LAKVKPILGK AEAEGMAAIA LTDQNNLCGL VKFYSTCHDK
GIKPIIGADF WMLVPGFEDE FCAVTVLAMD NEGYQNLTQL ISQAYLRGQV QGRVAIDQEW
LLTYNSGILL LSGAKEGDLG KALIKGNAAQ AASLTQFYQK HFPDRYFIEL IRTGRADEET
YLHMAVKHAA EVGLPVVATN QVVFLSPEDF EAHEIRVAIH DGFTLADNRR PKKYSEQQYL
RSEDEMCELF SDIPEAIENT VEIAKRCNVT VRLGEYFLPN FPTGELSTAD FLVERSKEGL
EERLEFLFPD PAERAEKRKE YDERLDIELQ VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGREAVSQI ITFGTMAAKA VVRDVGRVLG HSYGFVDRIS KMIPPEPGMT LAKAFEVEPG
LQEAYDADEE VKDLIDMARK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ
FDKNDVEYAG LVKFDFLGLR TLTIIDWALG MINPRLAKLG KPPVDIAAIP LDDSKSFSVL
KRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIDRKHGHEE
ISYPDATWQH ESLKPILEPT YGIILYQEQV MQIAQTLAGY TLGGADMLRR AMGKKKPEEM
AKQRAGFEAG SVKNGVDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPS
EFMAAVMSAD MDNTDKIVTL VDECDRMGLK IIPPDVNKGL FKFTVDEDLN IVYGIGAIKG
VGEGPVEAIL EARKDGPFTD LFDFCARIDL KKLNKRVIEK LIYSGALDSL GPHRASMMAT
LPEAMQAADQ HAKAQATGQH DMFGLLNDDQ QDEKQQFVEC TPWPDKIWLE GERETLGLYL
TGHPINQYLK ELKNYTSGRL KDIHPTERGK TVKAAGLVVA SRVMLTKRGS KMGLLTLDDK
SARLEVMLFT EAFEKFGHLL EKDRILICEG EVSFDDFSGG NRMTARNIID ISEARSHFAK
ALEVDLASQQ ATEAMLDKFF DVITPWKGGA VPLIVNFSRA DASGRLQLGD DWRVDPSDDL
VLALQTLIGP DKIRIQF
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