Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1147 |
Symbol | |
ID | 4603399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1396733 |
End bp | 1399267 |
Gene Length | 2535 bp |
Protein Length | 844 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639780494 |
Product | surface antigen |
Protein accession | YP_927024 |
Protein GI | 119774284 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.003885 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.883859 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTTGC CCGACTCTGA GCAAGGACAG ACAAATAATC AGAAGTGCTC TATGAGATTG AATAAGCTTT TTGCCTCTAT GATGCTGCTA GGCGCATCAT ATTCAGGGAC AGGTCTGGCT GAGACCTTTG CGCCATTCAC AGTCACCGAC ATTCAAGTAG AAGGTTTGCA ACGTGTTGCA CTGGGTGCTG CCTTGCTCAG CCTGCCAATC AAGGTAGGTG ATACCGTTGA CCAGCTGAAA CTGCAGCAGG CCATTAAGAG CCTTTATGCC ACCACCAACT TTGATACTGT TTCGGTTGCC AACGATGACG GTGTTCTCGT TGTGACCGTC AAAGAGCGCC CCACCATCAG TGAGGTGACC TTTGAAGGTA ACAAGGACAT CAAAGACGAA CAGCTGCAGG AAAGCCTCGA TAACAGTGGT GTGAAGGTGG GTGAAGCCCT CGATCGCACC ATGCTGTCAG GTATCGAAAA AGGTCTGCAG GACTTCTACT ACGGTGTGGG TAAATACGGT GCCAAGGTTG AGGCTCAGGT CATTAACCTT CCACGTAACC GCGTTGAACT GAAATTCAAG TTTACCGAAG GTCTGGCGGC CGAGATTCGT CAGATCAATA TCGTGGGCAA CAGCAAGTTT TCCGATGCCG AGCTGATTGG CATGCTTGAG CTGAAAGACT ATGTTGCCTG GTGGGATCTC TTCGGTGAGC GCCGCTACCA GAAGCAAAAG CTACAGGCCG ACCTTGAAAC CATCAAGACT CACTACCATA ACAACGGCTA TATCCGCTTT GATGTGACCT CTACCCAGGT GGCAATGACG CCTGATCGCA AGGGCCTGTA CATCACCATT AACGTGGATG AAGGCGAGCA GTACAAGGTG AAGGAAGTAA ACCTCACCGG CGATCTGATG GGCCGCGAAG AGCTGATGCG GGCTATTCTG CCAATCAAGG CGGGTGACCA GTACAACGGC GCCGACGTGA CCTTTACCGA AGAAATGTAC GCCAAGTATC TGGGGCGTTT CGGTTATGCC TATCCTGAGG TCAAAACCTT CCCGGAAATT GACGACGAAA ACAAAGAAGT AACCCTCAAT GTGAACGTGC GTCCCGGCAA GCGTGTGTAT GTTCGCTCTG TTAACTTCAC CGGTAACACT GTGACCAAGG ATGAAGTGCT GCGCCGTGAA CTGCGTCAGA TGGAAGGTGC CTGGCTCAAC TCCGCCAACG TAGAACTGTC GAAAAACCGT TTGAACCGTT TGGGCTTCTT CGAAACCGTC GACACCGAAA CCGTGCAGGT GCCGGGTACA GATGACCTGG TGGACGTTTC GTTTAAAGTC AAAGAGCAGC CATCCGGCTC TTTTAACGCC GGTATTGGTT ACGGCACCGA GTCAGGTATC AGCCTGCAGT TTGGTGTGCA GCAGAGCAAC TTTCTTGGTA CGGGTAACCA GGCCGGTATC AATATCAATA CCAACAAGTA TTCCAAGAAC GTCAGCCTGT CTTACTCAGA TCCTTACTTC ACCAAAGACG GTGTGAGTTT GGGTGGCAAC ATTTACTGGA ACGAGTTCGA TGCCAACGAG GCGAACCTTG AGCGTTATAA GAACAGCTCT TATGGTGTTG CCCTGAGCAG CGGTTTCCCT GTGAATGAGT ACAACCGTCT TAACTTTGGT GTCGGTTTCC GTCACAACAC CATTTCGGAA ATTTCGGCGT ACGAACAGGC GCTGCGCTTT TATAATATTT ACCGTGATGA AGACGACCCT AACTCCGACC TCAGCTTCAA TAACTTTGAG CTGAACGCAG GTTGGTACAG AAGCACCCTG AACCGCGGCA CCTTCCCAAC TGATGGCTCC AGCCAGCGCT TGTCGGGCAA GATGTCGACC CCGGGCTCGG ATCTCCAGTA CTTCAAGACC GACTTGGATA CCAACTTCTA CTTCCCGCTG ACCCGCAGCC ACAGCTTCGT ACTGTTGAGT CGTGCCCGCA TCGGTTACGG TAATGGTTAC GGTGACTTCA ACGGTAACGA CCAAATCCTG CCATTCTGGG AAAACTACTA CTCGGGTGGT TCGAGCAGTC TGCGAGGCTT TAAGTCCAAC TCTGTAGGCC CACGTTCCTT CTACGTCGTT CGTGGCAGTG AACCCTGTTC TCCTGACCCA AGTGGGGATG GGTGCGGCTT GCCGGGCGAT CCTAACCAAA TTCAGGTCAG CCAGGGGCGC TCCATCGGTG GTAACGCCGT GGCTACAGCC AGTGTCGAGC TGATTGTGCC AACGCCGTTC CTGGATGAGG CTTACACCAA TTCCGTACGG ACCAGCTTCT TCGTGGATGC CGGCAACGTA TGGGACACCG AGTTTGATTA CGACAAGTAT CGCTCTTTGC CAGCTGAGGA ATTTGCCAAG CTCGAAGACT ACAGCGACCC AAGCCGCCTG CGGGCTTCAT GGGGTATGAG CGTACAGTGG TTGTCACCCA TGGGACCCAT GGTATTCAGC CTGGCCTGGC CGATTAAAGA GTACGAAGAC GACGAGACCG AGATCTTCTC CTTCAATATT GGCAAAACTT TCTAA
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Protein sequence | MILPDSEQGQ TNNQKCSMRL NKLFASMMLL GASYSGTGLA ETFAPFTVTD IQVEGLQRVA LGAALLSLPI KVGDTVDQLK LQQAIKSLYA TTNFDTVSVA NDDGVLVVTV KERPTISEVT FEGNKDIKDE QLQESLDNSG VKVGEALDRT MLSGIEKGLQ DFYYGVGKYG AKVEAQVINL PRNRVELKFK FTEGLAAEIR QINIVGNSKF SDAELIGMLE LKDYVAWWDL FGERRYQKQK LQADLETIKT HYHNNGYIRF DVTSTQVAMT PDRKGLYITI NVDEGEQYKV KEVNLTGDLM GREELMRAIL PIKAGDQYNG ADVTFTEEMY AKYLGRFGYA YPEVKTFPEI DDENKEVTLN VNVRPGKRVY VRSVNFTGNT VTKDEVLRRE LRQMEGAWLN SANVELSKNR LNRLGFFETV DTETVQVPGT DDLVDVSFKV KEQPSGSFNA GIGYGTESGI SLQFGVQQSN FLGTGNQAGI NINTNKYSKN VSLSYSDPYF TKDGVSLGGN IYWNEFDANE ANLERYKNSS YGVALSSGFP VNEYNRLNFG VGFRHNTISE ISAYEQALRF YNIYRDEDDP NSDLSFNNFE LNAGWYRSTL NRGTFPTDGS SQRLSGKMST PGSDLQYFKT DLDTNFYFPL TRSHSFVLLS RARIGYGNGY GDFNGNDQIL PFWENYYSGG SSSLRGFKSN SVGPRSFYVV RGSEPCSPDP SGDGCGLPGD PNQIQVSQGR SIGGNAVATA SVELIVPTPF LDEAYTNSVR TSFFVDAGNV WDTEFDYDKY RSLPAEEFAK LEDYSDPSRL RASWGMSVQW LSPMGPMVFS LAWPIKEYED DETEIFSFNI GKTF
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