Gene Sama_1147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1147 
Symbol 
ID4603399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1396733 
End bp1399267 
Gene Length2535 bp 
Protein Length844 aa 
Translation table11 
GC content52% 
IMG OID639780494 
Productsurface antigen 
Protein accessionYP_927024 
Protein GI119774284 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.003885 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.883859 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTGC CCGACTCTGA GCAAGGACAG ACAAATAATC AGAAGTGCTC TATGAGATTG 
AATAAGCTTT TTGCCTCTAT GATGCTGCTA GGCGCATCAT ATTCAGGGAC AGGTCTGGCT
GAGACCTTTG CGCCATTCAC AGTCACCGAC ATTCAAGTAG AAGGTTTGCA ACGTGTTGCA
CTGGGTGCTG CCTTGCTCAG CCTGCCAATC AAGGTAGGTG ATACCGTTGA CCAGCTGAAA
CTGCAGCAGG CCATTAAGAG CCTTTATGCC ACCACCAACT TTGATACTGT TTCGGTTGCC
AACGATGACG GTGTTCTCGT TGTGACCGTC AAAGAGCGCC CCACCATCAG TGAGGTGACC
TTTGAAGGTA ACAAGGACAT CAAAGACGAA CAGCTGCAGG AAAGCCTCGA TAACAGTGGT
GTGAAGGTGG GTGAAGCCCT CGATCGCACC ATGCTGTCAG GTATCGAAAA AGGTCTGCAG
GACTTCTACT ACGGTGTGGG TAAATACGGT GCCAAGGTTG AGGCTCAGGT CATTAACCTT
CCACGTAACC GCGTTGAACT GAAATTCAAG TTTACCGAAG GTCTGGCGGC CGAGATTCGT
CAGATCAATA TCGTGGGCAA CAGCAAGTTT TCCGATGCCG AGCTGATTGG CATGCTTGAG
CTGAAAGACT ATGTTGCCTG GTGGGATCTC TTCGGTGAGC GCCGCTACCA GAAGCAAAAG
CTACAGGCCG ACCTTGAAAC CATCAAGACT CACTACCATA ACAACGGCTA TATCCGCTTT
GATGTGACCT CTACCCAGGT GGCAATGACG CCTGATCGCA AGGGCCTGTA CATCACCATT
AACGTGGATG AAGGCGAGCA GTACAAGGTG AAGGAAGTAA ACCTCACCGG CGATCTGATG
GGCCGCGAAG AGCTGATGCG GGCTATTCTG CCAATCAAGG CGGGTGACCA GTACAACGGC
GCCGACGTGA CCTTTACCGA AGAAATGTAC GCCAAGTATC TGGGGCGTTT CGGTTATGCC
TATCCTGAGG TCAAAACCTT CCCGGAAATT GACGACGAAA ACAAAGAAGT AACCCTCAAT
GTGAACGTGC GTCCCGGCAA GCGTGTGTAT GTTCGCTCTG TTAACTTCAC CGGTAACACT
GTGACCAAGG ATGAAGTGCT GCGCCGTGAA CTGCGTCAGA TGGAAGGTGC CTGGCTCAAC
TCCGCCAACG TAGAACTGTC GAAAAACCGT TTGAACCGTT TGGGCTTCTT CGAAACCGTC
GACACCGAAA CCGTGCAGGT GCCGGGTACA GATGACCTGG TGGACGTTTC GTTTAAAGTC
AAAGAGCAGC CATCCGGCTC TTTTAACGCC GGTATTGGTT ACGGCACCGA GTCAGGTATC
AGCCTGCAGT TTGGTGTGCA GCAGAGCAAC TTTCTTGGTA CGGGTAACCA GGCCGGTATC
AATATCAATA CCAACAAGTA TTCCAAGAAC GTCAGCCTGT CTTACTCAGA TCCTTACTTC
ACCAAAGACG GTGTGAGTTT GGGTGGCAAC ATTTACTGGA ACGAGTTCGA TGCCAACGAG
GCGAACCTTG AGCGTTATAA GAACAGCTCT TATGGTGTTG CCCTGAGCAG CGGTTTCCCT
GTGAATGAGT ACAACCGTCT TAACTTTGGT GTCGGTTTCC GTCACAACAC CATTTCGGAA
ATTTCGGCGT ACGAACAGGC GCTGCGCTTT TATAATATTT ACCGTGATGA AGACGACCCT
AACTCCGACC TCAGCTTCAA TAACTTTGAG CTGAACGCAG GTTGGTACAG AAGCACCCTG
AACCGCGGCA CCTTCCCAAC TGATGGCTCC AGCCAGCGCT TGTCGGGCAA GATGTCGACC
CCGGGCTCGG ATCTCCAGTA CTTCAAGACC GACTTGGATA CCAACTTCTA CTTCCCGCTG
ACCCGCAGCC ACAGCTTCGT ACTGTTGAGT CGTGCCCGCA TCGGTTACGG TAATGGTTAC
GGTGACTTCA ACGGTAACGA CCAAATCCTG CCATTCTGGG AAAACTACTA CTCGGGTGGT
TCGAGCAGTC TGCGAGGCTT TAAGTCCAAC TCTGTAGGCC CACGTTCCTT CTACGTCGTT
CGTGGCAGTG AACCCTGTTC TCCTGACCCA AGTGGGGATG GGTGCGGCTT GCCGGGCGAT
CCTAACCAAA TTCAGGTCAG CCAGGGGCGC TCCATCGGTG GTAACGCCGT GGCTACAGCC
AGTGTCGAGC TGATTGTGCC AACGCCGTTC CTGGATGAGG CTTACACCAA TTCCGTACGG
ACCAGCTTCT TCGTGGATGC CGGCAACGTA TGGGACACCG AGTTTGATTA CGACAAGTAT
CGCTCTTTGC CAGCTGAGGA ATTTGCCAAG CTCGAAGACT ACAGCGACCC AAGCCGCCTG
CGGGCTTCAT GGGGTATGAG CGTACAGTGG TTGTCACCCA TGGGACCCAT GGTATTCAGC
CTGGCCTGGC CGATTAAAGA GTACGAAGAC GACGAGACCG AGATCTTCTC CTTCAATATT
GGCAAAACTT TCTAA
 
Protein sequence
MILPDSEQGQ TNNQKCSMRL NKLFASMMLL GASYSGTGLA ETFAPFTVTD IQVEGLQRVA 
LGAALLSLPI KVGDTVDQLK LQQAIKSLYA TTNFDTVSVA NDDGVLVVTV KERPTISEVT
FEGNKDIKDE QLQESLDNSG VKVGEALDRT MLSGIEKGLQ DFYYGVGKYG AKVEAQVINL
PRNRVELKFK FTEGLAAEIR QINIVGNSKF SDAELIGMLE LKDYVAWWDL FGERRYQKQK
LQADLETIKT HYHNNGYIRF DVTSTQVAMT PDRKGLYITI NVDEGEQYKV KEVNLTGDLM
GREELMRAIL PIKAGDQYNG ADVTFTEEMY AKYLGRFGYA YPEVKTFPEI DDENKEVTLN
VNVRPGKRVY VRSVNFTGNT VTKDEVLRRE LRQMEGAWLN SANVELSKNR LNRLGFFETV
DTETVQVPGT DDLVDVSFKV KEQPSGSFNA GIGYGTESGI SLQFGVQQSN FLGTGNQAGI
NINTNKYSKN VSLSYSDPYF TKDGVSLGGN IYWNEFDANE ANLERYKNSS YGVALSSGFP
VNEYNRLNFG VGFRHNTISE ISAYEQALRF YNIYRDEDDP NSDLSFNNFE LNAGWYRSTL
NRGTFPTDGS SQRLSGKMST PGSDLQYFKT DLDTNFYFPL TRSHSFVLLS RARIGYGNGY
GDFNGNDQIL PFWENYYSGG SSSLRGFKSN SVGPRSFYVV RGSEPCSPDP SGDGCGLPGD
PNQIQVSQGR SIGGNAVATA SVELIVPTPF LDEAYTNSVR TSFFVDAGNV WDTEFDYDKY
RSLPAEEFAK LEDYSDPSRL RASWGMSVQW LSPMGPMVFS LAWPIKEYED DETEIFSFNI
GKTF