| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1146 |
|---|
| Symbol | |
|---|
| ID | 4603398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1395382 |
|---|
| End bp | 1396752 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639780493 |
|---|
| Product | membrane-associated zinc metalloprotease, putative |
|---|
| Protein accession | YP_927023 |
|---|
| Protein GI | 119774283 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0106908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.442954 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGACA TCCTCTGGAA TGCCGCATCT TTCATCGTTG CGCTGGGTTT GCTTATCACT
GCGCACGAAT ACGGACACTT TTATATTGCC CGGCGCTGTG GCGTGAAGGT GGAACGTTTC
TCCATCGGCT TTGGTAAGCC CATCTGGCGT CGTGTTGGCC AGGACGGTAC CGAGTATGTC
ATTGCCATGA TCCCACTCGG TGGCTATGTC AAAATGCTGG ATGAGCGTGT TGACGAAGTG
CCAGCAGCGC TCCAGTCCCA GGCGTTTAAT CGTAAAAACG TCTGGCAGCG CATCGCTATT
GTGGCAGCAG GCCCGGTGGC AAATTTTATT TTTGCGGTGT TTGCGCTCTA CATCATGTAC
CTGATTGGCG TGCCTTCGTT AAAGCCGGTG ATTAATGCGA CCCATCAAAA TTCTTCGGCG
TCAGTCATCA CAGTCACGGA ACCCATGCAA ATCCTTGCGG TCTCAGGACA GAAGGTGCGC
AACTGGGAAG AGGTTAATCT CGCCCTGGTT GGCCATATCG GGGATGACAG CCTGAGCCTG
ACACTGGCAC CGCTCGCTCG CCTGGAAGGG CAGAGCGGTG ACGAGCGCAC CTATACCCTG
GATACCCGCA ACTGGAAATT CGACCCGGAA AAGGAGTCGG CTATCAGCAC GCTTGGGCTG
GGTATGCTGA GGCCTCAGGT GTTGCCCTTA GTGGCAGCCG TGACGCCAGG CAGCGCAGCA
GATGAAGCAG GTATCAAAGC CGGTGATGAG ATTGTCGGTA TCAATGGCGT CAGCTATGGC
GGTTGGGAAT GGTTCGTGGC CACAATTCAG GCATCTTCCA ACAAGCCGCT GCAAGTCACT
ATCAAACGGG GTGGCGAGCA AAAGCAACTG ACCGCTACTC CGAAACCCGG CAAAGATGCC
CAGGGTAATG AGGTCGGCTT GATTGGTATT ACACCTCAGG CCAGCGAACT GCCCGAATCC
ATGCGTATTC AGTTGAAATA TGGCGTGTTA GACTCACTGG CTGTTGCTGC CGACAAAACC
TGGCAGTTGA CTGTGGTGAG CGTAAAGATG ATAGGTAAAC TCTTTACCGG TGATGTGTCG
GTGAAGAATC TGAGCGGTCC GATTTCAATC GCTCAGGGCG CCGGGAATAG CGCCAACTAC
GGCTTGGTGT ACTTTTTGGG ATTTTTGGCT CTTATCAGCG TGAACCTGGG CATCATTAAC
CTGTTGCCTC TACCCGTGCT CGATGGGGGC CATTTGCTGT ATTACTTTGT GGAAGTGATC
ACCGGGAAGC CTGTACCCGA AAAGGTACAG GAAATAGGAT TCAGATTTGG GGCAGCCTTG
CTGCTAATGT TGATGAGTAT CGCCCTTTTC AATGATTTTG CCCGACTCTG A
|
|---|
| Protein sequence | MYDILWNAAS FIVALGLLIT AHEYGHFYIA RRCGVKVERF SIGFGKPIWR RVGQDGTEYV
IAMIPLGGYV KMLDERVDEV PAALQSQAFN RKNVWQRIAI VAAGPVANFI FAVFALYIMY
LIGVPSLKPV INATHQNSSA SVITVTEPMQ ILAVSGQKVR NWEEVNLALV GHIGDDSLSL
TLAPLARLEG QSGDERTYTL DTRNWKFDPE KESAISTLGL GMLRPQVLPL VAAVTPGSAA
DEAGIKAGDE IVGINGVSYG GWEWFVATIQ ASSNKPLQVT IKRGGEQKQL TATPKPGKDA
QGNEVGLIGI TPQASELPES MRIQLKYGVL DSLAVAADKT WQLTVVSVKM IGKLFTGDVS
VKNLSGPISI AQGAGNSANY GLVYFLGFLA LISVNLGIIN LLPLPVLDGG HLLYYFVEVI
TGKPVPEKVQ EIGFRFGAAL LLMLMSIALF NDFARL
|
|---|
| |