| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1136 |
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| Symbol | dapD |
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| ID | 4603388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1384757 |
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| End bp | 1385581 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780483 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_927013 |
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| Protein GI | 119774273 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.58685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.504465 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAGCG TATCGAGGCG GCTTTTGAAG CTCGCGCAAA CATCACCCCA
AGCAGTGTCG AGCCAGGCGT GCGTGCCGAT GTTGAGACAG TGATCAACAT GCTCGACAAG
GGCGAAATGC GCGTGGCCGA GAAAATTGAC GGCCAGTGGC ATGTTAACCA ATGGCTGAAA
AAGGCCGTAC TGCTGTCGTT CCGCATTTTT GACAATGGCG TTATCGAAGG CGGCGAAACC
AAGTACTTCG ATAAGGTACC CATGAAGTTT GCTGATTACG ACGAAGCACG TTTCCGCGCC
GAAGCCATCC GGGTTGTGCC TCCTGCTGCC GTGCGTAAAG GCTCGTTTAT CGGTAAAAAC
ACCGTGCTGA TGCCATCTTA CGTGAACCTC GGGGCCTATG TTGACGAAGG TACCATGGTT
GACACCTGGG CGACCGTGGG CTCCTGTGCG CAAATTGGTA AAAACGTGCA CCTGTCTGGT
GGCGTCGGCA TCGGCGGCGT ACTCGAACCG TTGCAGGCTG GCCCCACCAT CATTGAAGAC
AACTGCTTCA TCGGTGCCCG CTCTGAAATC GTAGAAGGCG TGGTGGTAGA AGAAGGCTCT
GTGATCTCCA TGGGCGTTTA CATTGGCCAG AGCACCCGCA TTTACGACCG TGAAACCGGT
GAAATCCATT ACGGTCGCGT TCCGGCCGGC TCAGTAGTAG TATCAGGTAC CCTGCCTTCG
TCATGCGGTA AGTACAACCT CTACGCCGCC ATCATTGTGA AGAAGGTCGA TGAAAAGACC
CGCGGCAAAG TCGGTATCAA TGAACTGCTG CGTATCGTCG ATTAA
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| Protein sequence | MEALRQRIEA AFEARANITP SSVEPGVRAD VETVINMLDK GEMRVAEKID GQWHVNQWLK
KAVLLSFRIF DNGVIEGGET KYFDKVPMKF ADYDEARFRA EAIRVVPPAA VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGTLPS
SCGKYNLYAA IIVKKVDEKT RGKVGINELL RIVD
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