| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1105 |
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| Symbol | |
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| ID | 4603357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1337715 |
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| End bp | 1341140 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780452 |
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| Product | signal transduction histidine kinase-like protein |
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| Protein accession | YP_926982 |
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| Protein GI | 119774242 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCA ACCCGCAGCC CTCAGCCTGG TTTTTCAGCC ACTCAATAAG CACTGGCCTG
CGCCATTGTT GGCATTTACT GGCGATGCTG TTTGTCTTTG CCATCAGCTT TCAAAGCCAA
GCCATTGACT CATCCATTCT TACTCCACCG CTGTTCCAGG TTGAAGCCAA TCACAAACTA
CCGGGCAAAG AAGTCCTCAA ACTGGAAATC GACCAACAGG GCTTTATCTG GGTAGGCACC
CGCAGAGGCG TATTCCGCTT TGATGGTTAT GAATATCAGC CACTTGAAAG CGCAAACAAG
CTGGATTTAT CGAAGCTGCA TGTGCGCGCC TTGCTTGCCG ATGGCCAGAT TTTGTGGATT
GGCACCATGA CGCAGGGCGT CTACCGGGTC GACTTAAGTA CCTGGCAGGC AACCCATTTT
GCGCGAAACC CCGGGATGTC GGGCAGCATA GGTGGCAGCC AGGTCAATGC CATTAAAAAA
GACCGCAACG GCAAACTCTG GTTTGCCCAC GACCGGGGGC TGGACAGCTG GAGCGAACAG
AGCGCGCAAT TCACCCCTTA TCTTTCCCTC GATAAACCCG ACGACCGTTA TCACAACTAC
CTGCTGGATA TCGAATTCGA TGCCGAGGGC AAACTCTGGC TGTCTACCGC TATGGGACTG
GCCAGTATGG ATATGGGTGC AGCCGGTTTC AGGCTATTTG CCAATGAGGG GGAAATGCTG
CACAGGGTGG TACTGCGCAG GCTGTATCTT GCCAGCGACA ACCGCCTGTG GCTTACCAGC
CAGAATCAGG GCTCCTATAT CTTAAGCCCC GACTCTGGGC GGGTGTTGCA ACTTGAACAA
GACGAAAGTA GTGCCGCCCA CAAGGTCATC AACACCGGCA TTGCAGAAAC CCTGGAAGCC
GATGGCAGTC GCCGCATCTG GCTCAGCGGC ACCAAAGGCG TGGAGCTGCG CGACGGCAAA
ACCGGCAAGC TTATCAAACA TCTGCAGGGA AACCTGCTTG ACCATCATGG GCTTGCGGGC
GATGTGGTGT ATTCGATAAC AAGCTCACCC TCGGGCACCC TGTGGCTGGG GGTGCTGGGC
GTAGGGCTGC AATTCCATCC GCCTCAGGCC CAGGGCTTCT CGCTGATTGA CCGTTTTGCA
CCCGCGCTGA AAGAGCTGTT CTCATCCAAT ATCCATCAAG TGCTTAATCT GGGTGCGGAT
GAACTCTTGG TACTGACCGA ACAACAGGCA AGCCGCGTTA ATCTCAGCAC CGGCCTTATA
GCGCCGTTCA GCGATGATGT TAAAGTTCAA CAAAAACTGC TGGTTGCGGC CATAAAAGAC
CATCAGGACA ACTTTTGGTT TGGGGGCGAC AGCGGCAATC TGATAACCAC CAGCGCCGAT
GGCCATTGGC GTAACGAACT GCAATTGCCG CTCACTAAAA ATGACGGTGT GTTCGTGAAA
AGCCTTGCCC TTGGACAAGA GCAGGAACTC TGGGCCGGCA CTGACCGGGG GCTGGTCAGG
GTATCTCTGG ACAACCTGAG TATGTCGCCG CTTAAAAATG CCGACGGCAG CCGCTTTATC
AGCTTCGTTC GCTGCCTCTA CCTTGATGAG CAAAATCGGC TCTGGGTTGG CACCCAGGGT
GGGCTGGGAT TGGTGATGCC GGGTGCTGAC ACTGTCAATC TCTTCAGCCG CGAACAGGCA
ACCGAAGGCA GTTTGCGCCA CAACCAGATA AATCAAATCC TTGGCGATAG TCAGGGTAAC
CTGCTAATCA CCCACCCAGA AGGCATAGAC AGGCTGAGCA GCAGCGAGCT GGAAAAACTC
ACAGTTACGC CCGAACCAAT GTCATCCTCG GGGTCTGACA AGAACGTCGC CGTATTGAGA
TTCAGCCCCT TTGCCAACGA CATCACAGCC CAGATGATAC AGCCAGCCAG ATTAGTGGCA
TTGCCAACGG GACAGCTCTG GTTGGGTAAC ACGCATTTAT TGGATGAAAA TGGCCTGCTG
CTGGCACAGT TTGGTGAGCG TGAGGGCGCG CTTGACCTCG GCTGGAGCCG CAGCAGCCCA
CTTCTCGATG ACCACAGTTT CGCCTATGCC AGCAACAACA GCATGCAGCT GATAAGCACC
AAAGCCCGCC CACAGTCAAT CCCTGACGCC ACTGTCGCCA TTACCCACAT CCAGCTTGGC
AGTGTCGATA TGCCGTTCGA TCCTCTGTCG CCGGGGTTAG TGGTCGGCGC CGATGACCAA
CGCTTCTCGG TGCGTTTTGC CAGCCCCGAC GCCAGCAGCC TGGGTAAGGT GGATTACCGC
TATCGTCTCG ATGGCTACGA CAACGACTGG CTGGCTGCGC CTGAGGATAT GCGTCTTGCC
CGCTACACGG CTCTGCCGCC CGGGGAGTAC CGCCTGCATT TACAGGCGCG GGCGCAAGGC
GGCGACTGGG GGCCAGAGCT GTTACTGAAC GTCAGTAAAG TACCCAACTA TTATCAAACC
CTGTGGTTTC AGCTGCTGAT GGCGACGCTG CTGCTGGCGT TGTTGTATGG TCTGTTTCGC
TGGCGCCTGG CCCGCGCGCG TGCCCAGCAA CTGGCGCAGT TTGAGCATCG CGATGCCCTG
AGAAAGGCTG AAATGCTGTC AGAATTAATG GAGCAAAAAA ACCGAATGCT GGCTGAAGTT
GGCCACGACC TTCGCACGCC GCTGGCCATG ATTAAAGTGC AGTTGGAGGC CATGCAGGAT
GGTCTGCTGC AAAGCTCCGA TGCCACCTTT GAGTCGATGG CAAATAGCCT TGGCAATCTC
AATCGCATGG TGGGCGACAT AGTGCAGCTG TCTGCAGAGG AAGGAACAAA CCTTGCCATG
AGTAAGGCGC ACCTCAAGCT TTTGCCACTG ATTGAAGAGC AGATAACCGG CTTCCGCCCC
CTTATGGCAC AAAAAGGGAT CCGGGTTAGC TTCTCCAACA ACTGTCAGCC TGAGTTGCTG
CCAGAGCCAG CCGTGTTTGC GGATAAGGCA CGACTGGAGC AGGTTTTGGG GAATTTGTTG
AAAAACAGCT ACAAATACAC AAACCATGGC GGCCAGGTAC AGCTGTTGCT GGCGATGTCT
CCGTCTCATC TTCCCCAAGA GCCCCAGATC TTGGGCGCGT CGCAGCAAGC CTGGGTAACC
CTTCGCATCG ACGACTCGGC CCCCGGGGTT GCCGCCGAGG AATATGAGCG CCTGTTTGAC
CGGCTTTACC GTGCCAGCAA CACTGGGGAC GCTGACAAGG CAGAGACGGC ATCTGGTTCG
GGGCTTGGGC TGTGGATTTG CCAGTCGATT ATCCGCGCCC ACGGCGGCAC GATAACGGCT
TCGCCCTCCC CTTTGGGCGG GGTCGCCATT GAAATTCAAT TGCCGCTCAG TATCCCCATA
TCGGCCAAGC AGCCCTCTTT GCCTGCCACT GGGTCCATAA CCGATGCGTC TCAGCACAGC
GCTTAA
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| Protein sequence | MRRNPQPSAW FFSHSISTGL RHCWHLLAML FVFAISFQSQ AIDSSILTPP LFQVEANHKL
PGKEVLKLEI DQQGFIWVGT RRGVFRFDGY EYQPLESANK LDLSKLHVRA LLADGQILWI
GTMTQGVYRV DLSTWQATHF ARNPGMSGSI GGSQVNAIKK DRNGKLWFAH DRGLDSWSEQ
SAQFTPYLSL DKPDDRYHNY LLDIEFDAEG KLWLSTAMGL ASMDMGAAGF RLFANEGEML
HRVVLRRLYL ASDNRLWLTS QNQGSYILSP DSGRVLQLEQ DESSAAHKVI NTGIAETLEA
DGSRRIWLSG TKGVELRDGK TGKLIKHLQG NLLDHHGLAG DVVYSITSSP SGTLWLGVLG
VGLQFHPPQA QGFSLIDRFA PALKELFSSN IHQVLNLGAD ELLVLTEQQA SRVNLSTGLI
APFSDDVKVQ QKLLVAAIKD HQDNFWFGGD SGNLITTSAD GHWRNELQLP LTKNDGVFVK
SLALGQEQEL WAGTDRGLVR VSLDNLSMSP LKNADGSRFI SFVRCLYLDE QNRLWVGTQG
GLGLVMPGAD TVNLFSREQA TEGSLRHNQI NQILGDSQGN LLITHPEGID RLSSSELEKL
TVTPEPMSSS GSDKNVAVLR FSPFANDITA QMIQPARLVA LPTGQLWLGN THLLDENGLL
LAQFGEREGA LDLGWSRSSP LLDDHSFAYA SNNSMQLIST KARPQSIPDA TVAITHIQLG
SVDMPFDPLS PGLVVGADDQ RFSVRFASPD ASSLGKVDYR YRLDGYDNDW LAAPEDMRLA
RYTALPPGEY RLHLQARAQG GDWGPELLLN VSKVPNYYQT LWFQLLMATL LLALLYGLFR
WRLARARAQQ LAQFEHRDAL RKAEMLSELM EQKNRMLAEV GHDLRTPLAM IKVQLEAMQD
GLLQSSDATF ESMANSLGNL NRMVGDIVQL SAEEGTNLAM SKAHLKLLPL IEEQITGFRP
LMAQKGIRVS FSNNCQPELL PEPAVFADKA RLEQVLGNLL KNSYKYTNHG GQVQLLLAMS
PSHLPQEPQI LGASQQAWVT LRIDDSAPGV AAEEYERLFD RLYRASNTGD ADKAETASGS
GLGLWICQSI IRAHGGTITA SPSPLGGVAI EIQLPLSIPI SAKQPSLPAT GSITDASQHS
A
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