| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1091 |
|---|
| Symbol | |
|---|
| ID | 4603343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1317774 |
|---|
| End bp | 1318340 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780438 |
|---|
| Product | PhnA protein |
|---|
| Protein accession | YP_926968 |
|---|
| Protein GI | 119774228 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2824] Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism |
|---|
| TIGRFAM ID | [TIGR00686] alkylphosphonate utilization operon protein PhnA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.393322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG CAATCAGCCG CGCCTGCGGC AAATGTGAAC TCTGCAGCGC AGAAACCGAA
CTTTCCCTGT TTGAAGTACC AGCCAGTGGC GATCGCACTG ATAACGATAT TGCCCTGTGC
GGTACCTGTC AGGCGCAAAT TGCCGACACC GCCACCCTGG ATGTCAACCA CTGGCGTTGT
CTGAACGAAA GCATGTGGAG CACAGTGCCT GCCGTACAGG TAATGGCTGC CCGTATGCTC
AAAGAACTTT CCAGCGAAAC CTGGGCTCAG GATCTGCTGG ATATGATGTA TCTGGACGAA
GACACCCAGG CCTGGGTTGA TGCTGCCAAC GCCGAAGCTG CGCTGGATGC CGATGCCGCT
CCAACACTGG ACAGCAATGG CGCTCAGCTC GCCGCCGGCG ATACCGTGGT GATCATCAAA
GACCTGAACG TGAAGGGAAC CAGTTTTGTG GCCAAGCGCG GCACCGCCGT GCGTAACATT
GCCCTGACGA ACAATCCCGA GCACATCGAA GGCCGGGTAA ATGGTACCCG CATCGTTATC
TTGAGCTGCT ACGTTAAGAA ATCCTGA
|
|---|
| Protein sequence | MTDAISRACG KCELCSAETE LSLFEVPASG DRTDNDIALC GTCQAQIADT ATLDVNHWRC
LNESMWSTVP AVQVMAARML KELSSETWAQ DLLDMMYLDE DTQAWVDAAN AEAALDADAA
PTLDSNGAQL AAGDTVVIIK DLNVKGTSFV AKRGTAVRNI ALTNNPEHIE GRVNGTRIVI
LSCYVKKS
|
|---|
| |