Gene Sama_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1080 
Symbol 
ID4603332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1307678 
End bp1308172 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content52% 
IMG OID639780427 
Productglutathione peroxidase 
Protein accessionYP_926957 
Protein GI119774217 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0386] Glutathione peroxidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000852506 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.679739 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGATC TGTATCAATT TGCCGCCACC ACCATCAAGG GCGAGCAGCA GCCATTGGCC 
AACTATCGCG GTAAGGTCTT ATTGATAGTC AATACCGCCA GCAAATGTGG CTTTACCCCG
CAATATCAAG GGCTGGAAAG CCTCTATCGC AAATACCATG ACCAAGGCCT CGAAATACTC
GGCTTTCCCT GCAACCAGTT TGGCGCCCAG GAGCAAGGGA GTGAGTCAGA CATTCAGAGT
TTCTGTGAAC TCAATTTTGG TGTGACCTTT CCGCTGTTTG CCAAGGTTGA TGTCAATGGC
GAGCAGGCCC ACCCGCTGTT TACTCACCTT AAGCAGGAAG CACCGGGCCT CCTTGGCAGT
AAGGCCATCA AATGGAACTT CACCAAGTTT TTGGTCGGCC GTGACGGCAA GGTGAGAGAC
AGGTTCGCCC CCACTACCGA TCCCCAAAAG CTGGAAAAGG ATATCGAGGC ACTGCTGAAC
GAAGCGGCGA AATAA
 
Protein sequence
MTDLYQFAAT TIKGEQQPLA NYRGKVLLIV NTASKCGFTP QYQGLESLYR KYHDQGLEIL 
GFPCNQFGAQ EQGSESDIQS FCELNFGVTF PLFAKVDVNG EQAHPLFTHL KQEAPGLLGS
KAIKWNFTKF LVGRDGKVRD RFAPTTDPQK LEKDIEALLN EAAK