| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1073 |
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| Symbol | |
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| ID | 4603325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1299682 |
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| End bp | 1300608 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639780420 |
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| Product | porin |
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| Protein accession | YP_926950 |
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| Protein GI | 119774210 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0147353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.297004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACG CTTTTAACAA AACTCTGCTT GTTTCCGCGC TGACCGCTGC TTCTTTGGCT
TCTGCCCAAG CGGCTGAACC TTTAACTGTT TACGGTAAAC TGAACGTAAC AGTACAGTCT
AACGACGAAG CCGGTGAATC TGAAACCGTA GTACAGAGCA ACGCCTCTCG TCTGGGTGTT
AAAGGTGCTT TCGAACTGAG CTCTTCTCTC GAAGCCTTCT ACACCATCGA GTATGAAGTG
GATGCCGGCA GTGATGCCAA GGAAAACTTC CTGGCCCGTA ACCAGTTTGT GGGTCTGAAA
GGCAATTTCG GTGCGCTGTC TGTGGGTCGT AACGACACCA TGCTGAAAAT CGCCCAGGGT
AAAGTTGACC AGTTCAACGA CCTGTCAGGC GACCTGAAGA GCCTGTTCAA AGGTGAAAAC
CGTATCGAGC AAACCGTGAC TTACCTGTCA CCAGAGTTCG GTGGTTTCAA AGTGGGTGCT
ACCTACGCAG CTGAAGGTGC CAAGTCTCAG GCCGGTGAAG ACGGTTTCTC TCTGGCCGCC
ATGTACGGTG ATGCCAGCCT GAAGAAATCC GCTTTCTACG CTTCTGTTGC CTATGACAGT
GAAGTAAAAG GCTACGACAT CCTGCGTGCC ACTGTTCAAG CCAAGCTGGC TGGCCTGGTT
TTGGGTGGTA TGTACCAGCA GGAAGAGAAG TCAGTTGATG GTGACAGCAA GACAGGTTAC
CTGGTCAGTG CCGCTTACAA TATCGCTGAC GTGACCCTGA AGGGTCAGTT CCAGGACATG
GAAGACAAGG GTGACTCCTG GTCTATCGGT GCTGACTACA AGCTGGGCAA GCCAACCAAA
ATCTTCGCCT TCTACACCAG CCGTGACATG GAGTCTGCCG AAGACACCGA CAACTACATT
GGTGTGGGTA TCGAACACAA GTTCTAA
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| Protein sequence | MMNAFNKTLL VSALTAASLA SAQAAEPLTV YGKLNVTVQS NDEAGESETV VQSNASRLGV
KGAFELSSSL EAFYTIEYEV DAGSDAKENF LARNQFVGLK GNFGALSVGR NDTMLKIAQG
KVDQFNDLSG DLKSLFKGEN RIEQTVTYLS PEFGGFKVGA TYAAEGAKSQ AGEDGFSLAA
MYGDASLKKS AFYASVAYDS EVKGYDILRA TVQAKLAGLV LGGMYQQEEK SVDGDSKTGY
LVSAAYNIAD VTLKGQFQDM EDKGDSWSIG ADYKLGKPTK IFAFYTSRDM ESAEDTDNYI
GVGIEHKF
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