| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1052 |
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| Symbol | |
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| ID | 4603304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1273164 |
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| End bp | 1274963 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780399 |
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| Product | oxaloacetate decarboxylase |
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| Protein accession | YP_926929 |
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| Protein GI | 119774189 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
[COG5016] Pyruvate/oxaloacetate carboxyltransferase |
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| TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0474655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.268345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAG CCTTGGCCCT TACCGATGTG GTGCTGCGCG ATGCGCACCA ATCCCTGCTA
GCTACCCGTT TACGTATTGA AGACATGTTG CCCATCGCTG CCAAATTGGA TCAGGTGGGC
TATTGGTCAC TGGAGACTTG GGGCGGCGCG ACTTTCGATG CCTGTATCCG CTATCTGGGG
GAGGACCCCT GGGAGCGCCT GCGGCTGCTC AAGCAAGCCA TGCCCAACAC CCCGATGCAG
ATGCTGCTGC GGGGTCAGAA CCTGCTGGGT TATCGCCACT ATGCCGACGA TTTGGTGCAC
AGGTTCGTAG AGCGCGCCCA CGACAACGGC ATGGACGTGT TTCGGGTATT CGATGCCATG
AACGATGTGC GTAACCTGCA AGAGGCGGTG CGTGCCGTGA AGCAGGTGGG CGCCCATGCC
CAGGGCACCA TTTCCTACAC CACCAGCCCG GTACATAACC TGGACACCTG GGTAGATATG
GCCAAGCGCC TTGAGGATCT GGGCTGCGAT TCACTCTGTA TCAAAGACAT GGCCGGTCTG
CTGCGCCCTA TGGAAGCCTT CGAGCTGGTG AGCAGGCTTA AATCGCAAAC CGGGCTGATG
GTGGCCATGC ACAGCCATGC CACCACCGGG CTTTCTACCG CCACCTATCA AAAGGCGATT
GAGGCCGGTA TTGATGTGCT GGATACCGCG ATTTCGTCCA TGAGCCAGAC CTATGGCCAC
AGTGCCACCG AGACCCTGGT GGCCATGGTA GAAGACACCG AGCGCTCAAC CGGATTGGAT
ATGGCGCTTT TGGAAGAGAT TGCCGCCTAT TTCCGTGAGG TGCGTAAAAA GTACGCCAAA
TTCGAAGGCG CGCTGCAGGG CATTGATTCC CGAATTCTAC GCGCTCAGGT GCCAGGTGGC
ATGCTCACCA ATATGGAGAG TCAGCTTAAA GAGCAGGGCG CCAGCGATAA ACTCGATTTG
GTGCTCGATG AAATCCCCCG AGTGCGCGAA GACCTGGGTT TCTTGCCTCT TGTTACTCCA
ACCTCACAAA TCGTCGGCAC CCAGGCGGTG ATCAATGTGC TCACCGGTGA GCGCTACAAG
TCGCTCACCA AAGAAACTGA AGGGGTACTC AAGGGCGAAT ATGGTGCCAC CCCGGCGCCG
GTAAACGCTG AGCTGCAGCA GCGGGTACTT AAGGGGGCTG AGCCTGTTAC CTGTCGCCCT
GCCGATCTGC TCACTCCAGA GATGGTGCGT CTTCGCGCCG AGCTGGTCCA AAAGGCCGTG
GCCGAGAATA TAACGCTCAG TGAAGATCTG GATGATGATG TGCTTACCTA TGCGCTTTTC
CCTCAGATTG GTCTGCAGTT TCTCAAAAAC CGTGGCAATG CCGATGCCTT TGAGCCTGTG
CCTGTGGCGG TGCTTGCCGC CTCGTCAGCG CCAGTCAGGG TTGCCTCAGG GCCAGAAACT
TACACGGTGA AGGTAGATGG TCAAACCTAT GTGGTAGAGG TTGCTGCGGG CGGCGAAATC
AGCCAAATCC AGACTCAGGG GGTAAGTCAG TCCAGTGCCT CAGTTGCCCC AGTTGCCACA
GCGGCTGCGC CTGTAAGCCA CGAAATTAAA CTGGAAATGA GCGCGCCCCT GTCTGGCAAT
ATCTTCAAAA TTCATGTGTC GCCCGGCGAT ACGGTGAAGG CGGGGGATGT GGTGATCATC
CTCGAAGCCA TGAAGATGGA AACCGAAATC CGTGCCCAGG CCGACGGGGT TATTGCCCGT
CTATGGGTGA AAGAAGGCGA CTCGGTTGCC GTTGGCGCTC AGCTGTTGTC GTTGGCCTAA
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| Protein sequence | MTKALALTDV VLRDAHQSLL ATRLRIEDML PIAAKLDQVG YWSLETWGGA TFDACIRYLG
EDPWERLRLL KQAMPNTPMQ MLLRGQNLLG YRHYADDLVH RFVERAHDNG MDVFRVFDAM
NDVRNLQEAV RAVKQVGAHA QGTISYTTSP VHNLDTWVDM AKRLEDLGCD SLCIKDMAGL
LRPMEAFELV SRLKSQTGLM VAMHSHATTG LSTATYQKAI EAGIDVLDTA ISSMSQTYGH
SATETLVAMV EDTERSTGLD MALLEEIAAY FREVRKKYAK FEGALQGIDS RILRAQVPGG
MLTNMESQLK EQGASDKLDL VLDEIPRVRE DLGFLPLVTP TSQIVGTQAV INVLTGERYK
SLTKETEGVL KGEYGATPAP VNAELQQRVL KGAEPVTCRP ADLLTPEMVR LRAELVQKAV
AENITLSEDL DDDVLTYALF PQIGLQFLKN RGNADAFEPV PVAVLAASSA PVRVASGPET
YTVKVDGQTY VVEVAAGGEI SQIQTQGVSQ SSASVAPVAT AAAPVSHEIK LEMSAPLSGN
IFKIHVSPGD TVKAGDVVII LEAMKMETEI RAQADGVIAR LWVKEGDSVA VGAQLLSLA
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