| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1048 |
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| Symbol | alaS |
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| ID | 4603300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1267153 |
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| End bp | 1269855 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780387 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_926925 |
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| Protein GI | 119774185 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.2697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCCA AATTTTTGTC GGCAGCCCGT GGACGTGGCT GCGGCTTGTC GTATCAGGCT
TATCCAACTC AGGACGTTTT CATGTATCAA ACCACAGCCG CGCTTCGCAG TGCTTTTCTC
GAGTATTTCA GGCAGCAGGG TCACCAGGTA GTAGACAGCA GCTCTCTGGT TCCCGGTAAT
GATCCAACAC TGCTGTTCAC CAACGCCGGT ATGAACCAGT TCAAAGACTG TTTCCTCGGT
ATGGAGAAGC GCAGCTACGT ACGCGCCGCG ACCGCGCAGC GATGCGTACG TGCCGGTGGC
AAGCACAACG ACCTGGACAA CGTGGGTTAC ACCGCCCGTC ACCACACCTT CTTCGAAATG
TTGGGTAACT TCAGCTTTGG TGATTACTTC AAAGAAGACG CCATTCGTTT TGCCTGGGAA
TTCCTCACCG GCACCCTGAA ACTGCCGAAA GAGAAGCTGT GCGTTACCGT GTACCACACT
GATGACGAAG CATTCGATAT TTGGAACAAG CAAATCGGTG TTCCTGCTGA AAACATTATC
CGCATCGGAG ATAACAAGGG TGCACCATTC GCATCGGACA ACTTCTGGCA GATGGGCGAT
ACCGGTCCTT GCGGACCTTG TACCGAAATT TTCTACGATC ACGGCGAGCA CATTTGGGGT
GGCCGCCCAG GCAGTCCAGA AGAAGACGGT GACCGCTTTA TCGAGATCTG GAATATCGTA
TTTATGCAGT ACAACCGTCA GTCCGATGGT ACGCTGGACC CGCTGCCCAA GCCCGCGGTG
GATACAGGTA TGGGTATCGA GCGTATCTCT GCCATCATGC AGGGTGTTCA CTCTAACTAC
GAAATTGATA TTTTCCAGAA ACTGATCGCC AAAGCTGCCG AAATCATCGG TGTGAGCGAT
CTGGAAAATA AATCCCTTCG CGTTATTGCC GACCACATCC GCTCCTGTGC CTTCCTGGTT
GCCGATGGCG TGATGCCATC CAATGAAGGT CGCGGCTATG TGCTGCGCCG TATTATCCGC
CGTGCAGTGC GCCACGGAAA CAAACTGGGC GCCACCGACA CCTTCTTCTA CAAACTGGTG
CCTACTCTGA TAGAGGCTAT GGGGGATGCT GCCAAGGAAC TCAAGGCTAC CCAGACCATA
GTGGAAAAGG CGCTCAAAGC TGAAGAAGAG CAGTTCGCCC GCACTCTGGA GCGTGGGCTT
GGCATGCTTG ACGCTGCGCT GGCAGACCTC AAGGGTGACA CTCTGGACGG TGAAACCGTC
TTTAAACTTT ATGATACCTA CGGCTTCCCT GTGGATTTGA CCGCTGACGT GTGCCGCGAG
CGTAACCTCA AGGTAGACGA AGAAGGCTTT AACGCCGCCA TGGCCGAGCA GCGCAGCCGC
GCCCAGGCGG CTGGTCAGTT CAGTGCCGAC TATAACGCTG CGTTGAAAAT CGATACTGCC
ACCGATTTTT GTGGTTACAC CGAGCTTGCA GCCGAGAGTA AGGTCGTTGC GCTTTACCGT
GATGGCGAAT CCGTCGATGC TGCAGAGGCG GGCGCCGTTC TGGTTGTCGT GCTGGATAAC
ACCCCATTCT ATGCCGAGTC CGGTGGTCAG GTTGGTGACA AAGGTCAGCT GCTCGCTGAA
GGCGTTGAAT TCAACGTTGC CGATACCCAG AAGTTCGGCC AAGGCATTGG TCACAAGGGA
CAACTGGCGC TTGGCAGCAT CAAGGTTGGT GACAGCCTCA AAGCCATGGT GGATAAGAAG
CTGCGTCATC GCACAGAGCT TAACCACTCA GTGACGCACC TGCTGCACGC AGCGCTGCGT
CAGGTGCTGG GTACCCACGT GACCCAGAAA GGATCTTTGG TTGACCCTGA GCGTCTGCGT
TTTGACTTCT CCCACTTCGA AGGTGTTAAG CGTGAAGAGC TCAAAGCGGT TGAAGATCTG
GTTAACACCC AAATCCGTCG TAACCACGAA CTGAATTTCG CCGAGATGGA TATCGAAGAG
GCCAAGGCAA AAGGCGCCAT GGCACTCTTT GGTGAGAAGT ACGATTCCAA GGTACGCGTT
GTGACTATGG GCGACTTCTC TATCGAGCTG TGTGGTGGTA CCCACGTTGG CCGTACCGGT
GATATTGGTC TGTTTAAGAT CACTTCTGAA GGCGGTATCG CGGCGGGAAT TCGCCGTATC
GAAGCTGTGA CTGGTGCCGC TGCCATGGCT TATGTTGCCC AGCAGCAGGC CGAGCTTGAA
GAAGCCGCCG CACTGCTCAA GGGCGATGTA GCCTCAGTGG TTGCCAAGCT CAAAGCCCAG
CTCGACAAGG CCCGTCAGCT TGAGAAAGAG AATGCCCAGC TTAAAGACAA GCTGGCCGCC
GCTGCCAGTG CCGACCTTGC CGGTGACGCC CAGGAAATCA ACGGCGTTAA GGTATTGGTT
AAGCGCCTTG AAGGCGTGGA AGCCGGTGCT CTGCGCGGTT TGCAGGACGA ACTCAAGCAG
AAGCTGAAGT CCGGGGTTGT GTTACTCGCC ATTGGCAGTG GTGACAAGGT GAACCTGATT
GCCGGTGTGA CTCAGGATCT GACCGGCAAA GTGAAGGCCG GTGAACTGGT TGCCATGGTG
GCTGCGCAGG TGGGCGGTAA GGGCGGTGGT CGCCCGGATA TGGCTCAGGC TGGTGGCAGT
GAACCTGCCA AGCTCGACGG TGCCCTGGCC AGTGTTGTGC CTTGGCTTAA TGAGCGTCTG
TAA
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| Protein sequence | MSPKFLSAAR GRGCGLSYQA YPTQDVFMYQ TTAALRSAFL EYFRQQGHQV VDSSSLVPGN
DPTLLFTNAG MNQFKDCFLG MEKRSYVRAA TAQRCVRAGG KHNDLDNVGY TARHHTFFEM
LGNFSFGDYF KEDAIRFAWE FLTGTLKLPK EKLCVTVYHT DDEAFDIWNK QIGVPAENII
RIGDNKGAPF ASDNFWQMGD TGPCGPCTEI FYDHGEHIWG GRPGSPEEDG DRFIEIWNIV
FMQYNRQSDG TLDPLPKPAV DTGMGIERIS AIMQGVHSNY EIDIFQKLIA KAAEIIGVSD
LENKSLRVIA DHIRSCAFLV ADGVMPSNEG RGYVLRRIIR RAVRHGNKLG ATDTFFYKLV
PTLIEAMGDA AKELKATQTI VEKALKAEEE QFARTLERGL GMLDAALADL KGDTLDGETV
FKLYDTYGFP VDLTADVCRE RNLKVDEEGF NAAMAEQRSR AQAAGQFSAD YNAALKIDTA
TDFCGYTELA AESKVVALYR DGESVDAAEA GAVLVVVLDN TPFYAESGGQ VGDKGQLLAE
GVEFNVADTQ KFGQGIGHKG QLALGSIKVG DSLKAMVDKK LRHRTELNHS VTHLLHAALR
QVLGTHVTQK GSLVDPERLR FDFSHFEGVK REELKAVEDL VNTQIRRNHE LNFAEMDIEE
AKAKGAMALF GEKYDSKVRV VTMGDFSIEL CGGTHVGRTG DIGLFKITSE GGIAAGIRRI
EAVTGAAAMA YVAQQQAELE EAAALLKGDV ASVVAKLKAQ LDKARQLEKE NAQLKDKLAA
AASADLAGDA QEINGVKVLV KRLEGVEAGA LRGLQDELKQ KLKSGVVLLA IGSGDKVNLI
AGVTQDLTGK VKAGELVAMV AAQVGGKGGG RPDMAQAGGS EPAKLDGALA SVVPWLNERL
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