| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1043 |
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| Symbol | |
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| ID | 4603295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1260578 |
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| End bp | 1261468 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639780382 |
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| Product | lipoprotein NlpD |
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| Protein accession | YP_926920 |
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| Protein GI | 119774180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.859563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAGAT TGACAACTTG CTGCCTCTGT TTGCTCTTGT TGGCTGGTTG CAGCATGCAG
GCGCACTCAC CTGCACCAGT CGAAAGCCTG AATTCTAAAA AAAAGCCCGT GCACCCCAAA
GGAAGTCTGA CCAGTTCAAC TTATAAAGTG AAAAAGGGCG ATACCCTTTA CTCCATTGCT
TGGGGAGCTG GCACGGATTA CCACGAATTA GCCAAGATTA ATCAACTAAA TAAACCGTAC
ACTATCTTTC CCGGGCAGGT GTTAAAGCTG TCATCGACGG CTAAAAACAC CAAGCCAACA
AAGCAAACTA CCACAGCTTC CTCGAAACCG GATCCCAAGT CGGTAACAGC TAAAAACGAT
AAAAAACAAA GCGCTAGCCC AGTTGTGTCC AGCGGTCAAT CATCCGTAGT AGCACAGAAA
AAAACACTTG ATCCGAAAAA TAAAGCTGAT TACGCTGTAA CAAGTTCACA ACAAGGCGAT
AACCCGGTAG CGACTGCCAC TGACGGTTTA CCGAATGAAG TAGCACGCTG GCTGTGGCCA
GCAAAGGGAC GCTTAATTGG GACTTTCTCT GCCAGAGAGC AGGGGAGTAA AGGGATCAAA
ATAGCGGGAA GACGCGGGGA TCCGGTCAGA GCCGCCGCCG AAGGGCGAGT GGTTTACTCT
GGCAACGCAC TGAGAGGCTA CGGCAACCTT GTCATTATCA AGCACAGCGA GGACTTCCTT
AGTGCTTATG CCCATCTGGA TAAGATCCTG GTGACAGAAA AGCAACGGGT CAGTGCAGGA
CAGACGGTTG CGACAATGGG GAATACTGAC GCTGAACACG TGATGCTTCA TTTCGAGATC
CGTGATCACG GCGTATCAGT TAATCCACTT AAGTATTTGC CGAAGAAATA A
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| Protein sequence | MLRLTTCCLC LLLLAGCSMQ AHSPAPVESL NSKKKPVHPK GSLTSSTYKV KKGDTLYSIA
WGAGTDYHEL AKINQLNKPY TIFPGQVLKL SSTAKNTKPT KQTTTASSKP DPKSVTAKND
KKQSASPVVS SGQSSVVAQK KTLDPKNKAD YAVTSSQQGD NPVATATDGL PNEVARWLWP
AKGRLIGTFS AREQGSKGIK IAGRRGDPVR AAAEGRVVYS GNALRGYGNL VIIKHSEDFL
SAYAHLDKIL VTEKQRVSAG QTVATMGNTD AEHVMLHFEI RDHGVSVNPL KYLPKK
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