| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1040 |
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| Symbol | |
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| ID | 4603292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1258107 |
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| End bp | 1259189 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780379 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_926917 |
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| Protein GI | 119774177 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.871922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGC TGACTTATCT TTACGGCAAG CCGGCTGTAA GCGCCGATAT CCGCACCCAC
AACAGCGATT TTCAGGTAAA GGAAATCCTG CCGTTCCTGC CCGATGGTGA GGGCGAGCAC
CACCTGCTGC ATATCCGTAA AGATGGCCTG AACACGGCTC AGGTGGCAGA GATGATTTCC
AGATTTGCCA AGGTGCATCC CAAAGAAGTG ACCTTTGCCG GTCAAAAAGA CAAAAACGCC
ATTACAGAGC AGTGGTTTGG CGTGCGCATT CCCGGCAAGG AGACGCCAGA CTGGGCTGCC
ATGAGCAATG AGCAGATGCA GGTACTGTCG TTTGCCCGTC ATGGTAAGAA GCTGCGCACC
GGCGCGCTTT CAGGCAACCG CTTTACTTTG GTGCTGCGCA ATGTTTCAGA CCCAGAGGCG
CTGGTTGCAA GGCTCGAGCT GGTGCGCGAT GGCGGGGTGC CCAACTATTT TGGCGAGCAG
CGCTTTGGTC ATGACGGTGG CAATCTTGTT AAAGCGCGGC AGATGTTCGA AGGCCGCAAA
GTAAAAGACA GAAACAAACG CAGTCTCTAT CTCTCTGCGG TGCGCTCAGA GCTCTTTAAT
CAGGTGGCGA GTGCACGTCT GGCGCGTTTT GGCACAGCGC CCATCGAGGG TGATTGTGTG
ATGCTGTCGG GCTCACGCAG CTTTTTTACG GCCGAAAGTT GGGATGACTC CCTGAATAAA
CGTCTTGCCG AGCAGGACAT TCAGCTGTCG GCGCCACTTT GGGGCCGTGG TGAGCAGCTC
GCCAAAGGCG ACGCCGCAGC ACTTGAATCT TCGGTGCTGG CAGCCTACGA GCTTGAGCGC
AATGGTCTCG AAAAAGAAGG CCTTACCCAG GAGCGCCGAG CACTGCTGCT GCGTCCTGAG
CAGCTGAGCT TCAAGCTGGA TGGCGATGCC CTGACCCTGG ATTTCTGCCT GCCAGCGGGT
GCCTTTGCCA CCAGTGTGCT CAGAGAGCTT TGCGAGTACA CAGATATAAA AGAGCTGGAG
TGGCGCCGGG CGGTGGCCGA GCGTGATGCG CGGGAGGGCG ACAATGCGCC TGCTGGTGAG
TAA
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| Protein sequence | MTELTYLYGK PAVSADIRTH NSDFQVKEIL PFLPDGEGEH HLLHIRKDGL NTAQVAEMIS
RFAKVHPKEV TFAGQKDKNA ITEQWFGVRI PGKETPDWAA MSNEQMQVLS FARHGKKLRT
GALSGNRFTL VLRNVSDPEA LVARLELVRD GGVPNYFGEQ RFGHDGGNLV KARQMFEGRK
VKDRNKRSLY LSAVRSELFN QVASARLARF GTAPIEGDCV MLSGSRSFFT AESWDDSLNK
RLAEQDIQLS APLWGRGEQL AKGDAAALES SVLAAYELER NGLEKEGLTQ ERRALLLRPE
QLSFKLDGDA LTLDFCLPAG AFATSVLREL CEYTDIKELE WRRAVAERDA REGDNAPAGE
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