| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1039 |
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| Symbol | ispF |
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| ID | 4603291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1257628 |
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| End bp | 1258110 |
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| Gene Length | 483 bp |
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| Protein Length | 160 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780378 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_926916 |
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| Protein GI | 119774176 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.838937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAATCA GGATTGGCCA CGGTTTTGAT GTGCACAAGT TTGGCGCAGA CCGTCCACTC
ATTCTCTGCG GTATAGAAGT GCCTTACGAA ACAGGACTTA TTGCCCACTC CGATGGTGAT
GTAGTGCTGC ATGCCATCAG TGATGCCATT CTGGGCGCCA TGGCGCTGGG TGATATCGGC
AAACACTTTC CGGACACAGA TGCCGCCTAT GAAGGCGCCG ACAGCCGTGT GCTGCTGCGC
CACTGCTTTA AGCTTGCCCG TGAGCACGGC TTTGCCATCG GCAATCTGGA TGTGACCATC
ATCGCCCAGG CGCCGAAAAT GTTACCTCAC ATTGAGGCCA TGCGCGCGGT GCTGGCGGAC
GATCTGCAAA CTGAGCTTAA TAATATCAAC GTAAAAGCGA CCACCACCGA GAAGCTTGGT
TTCACCGGTC GCAAAGAAGG CATCGCCGTG GAAGCTGTGG TGTTGATGGA GAATGTGAAA
TGA
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| Protein sequence | MKIRIGHGFD VHKFGADRPL ILCGIEVPYE TGLIAHSDGD VVLHAISDAI LGAMALGDIG
KHFPDTDAAY EGADSRVLLR HCFKLAREHG FAIGNLDVTI IAQAPKMLPH IEAMRAVLAD
DLQTELNNIN VKATTTEKLG FTGRKEGIAV EAVVLMENVK
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