Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1033 |
Symbol | |
ID | 4603285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1250012 |
End bp | 1252216 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639780372 |
Product | GTP diphosphokinase |
Protein accession | YP_926910 |
Protein GI | 119774170 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0165822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTGTCTG TCCGCGAAGC ACATTTCAAC GATGTCGATT TCAATCTGGA AGACTGGGTG GTTCGGTATG TAGACGACGC CGAGGATGCC AGGGTGCTGC TAGAGCTGCT GCGCACCGTT CAGGCGATGC CGATGAAGGA TGCCAAGGCC CATGATGCCC TGATGTCCCG TGCCAGAGAG ATGATTGAAA TTCTGGCACC GCTGAATATG GACCTTGAGA CCCTGCAGGC GGCCGTACTG TTTTCGGTGC AGGAAGCGGG GCTCTTACCC CAGGAAAAAC TGGTCGAAAA GTTTGGTGAC AAGCTGGGTA ATCTTGTGGC CAGCGTCGTT ACCATGAATG CCATCGGCAG CCTGAAACTC AGTGAACAGT CGCGTTCCGC TGAAATGCAA ATCGACAACA TCCGTAAAAT GCTGCTGGCC ATGGTGGAAG ATGTGCGCGC CGTGGTGATT AAGCTTGCCG AGCGCGTGTG TCTGCTGCGG GCAGTAAAAA ATGCCGATGA AGAAACCCGG GTGTTGCTGG CCCGTGAAAT CGCCGATATC TATGCGCCGT TGGCAAACCG TTTGGGCATT GGCCAGCTCA AGTGGGAGCT TGAGGACATT TCCTTCCGCT ATCTGCATCC TGAAACCTAC AAAGAAATCG CCAAACAGCT CGACGGAAAG CGCATCGATC GCGAAACCTA TATAGAGCAG TTTGTGAATG ACCTGCAGGC CAAGCTCGAT GAAGAGCATA TTCGCGCCAA GGTTTATGGT CGCCCAAAAC ACATCTACTC CATCTGGCGC AAGATGAAGG GCAAACACCT CAAGTTTGAT GAGCTGTTTG ATGTACGCGC TGTGCGTATC GTCACCGACC GTTTGCAGGA CTGTTACGGG GCCTTGGGCG TGGTGCACAC CCTCTATCAT CATATTCCCC GGGAGTTTGA TGACTATGTC GCCAACCCCA AACCCAACGG CTATCAGTCC ATTCACACTA TTGTGGTGGG GCCAGAAGGC AAAACCGTTG AAATTCAAAT TCGTACCGAA GCCATGCATC AGGACGCCGA GCTGGGTGTG GCTGCACACT GGAAATATAA AGAGGGTCAT GCTGGCAAGC AGAGCGGTTA CGAAGAGAAA ATCAACTGGC TGCGCAAAAT CCTGCAGTGG CAGGAAGATG TGGTGGAAAG TGGCAACCTG GTGGAAGAAA TCCGCAGCCA GGTGTTCGAG GACAGGGTGT ATGTATTTAC CCCGTCCGGT GAAGTGGTAG ATTTGCCCGC CGGCAGTACC GTGCTCGACT TTGCCTATTA CATCCACTCT CAGGTTGGCC ACAAGTGTAT TGGCGCCAAG GTGGATGGCC GCATCGTGCC CTTCACTTAT CAGGTGGAAA CCGGTGAGCG GATTGAAATT ATCACCTCCA AGCACCCCAA TCCCAAGCGC GATTGGCTGA ATCCCAACCT GGGCTACATC AAGACCTCCA GGGCCCGCAG CAAAATCCAG CATTGGTTCA AGCAGCAGGA CAGGGACAAA AACCTGGCGG CCGGCCGCGA GATGCTGGAA GTCGAACTTG GCCGGGTGGG TCTGACGTTA AAAGACGCCG CCAGCGCCAT AGAGCGCTTT AACATGACCA ATATGGACGA CCTCTTGGCG GCCATCGGCG GTGGCGATGT GCGTCTCAAT CAGGTGGTTA ACCATATTCA GAGTCGGATG CGGGTGCATG AGATCTCCGA CGAAGAAGCC GTGGAAGATC TGGTCAAGAA AGGCCAGCAC AAGCCCATTG CCAAGACCCG GGATCAAATT GAAGTAAACG GCGTCGGGAA CCTCTTAAGC CATATTGCCC AGTGCTGCCG CCCTGTGCCC GGTGATGAAA TTTTCGGTTT TATTACCAAG GGACGCGGTA TTTCAGTGCA TCGAGCCGAC TGTGAGCAGG TGAAAGAACT GATGCGCGCC CATCCAGAGC GGGTGGTGGA TGTAGTTTGG GGCGAAAACT ATTCCGGTGG CTACAAAATC CGTCTGCGGG TACTCGCCAA CGACAGAACC GGATTGCTGC GGGATTTAAC CTCGGTGCTG GCGGCGGAAA AATCCAATGT GCTTGCCATG AGCAGCTCAT CGGATATCAA AAACCAGACC GCTGCCATTG AGCTTGAGCT CGAACTTTAC AACGTAGATG GCCTCTCGAG GGTGCTGTCC AAGCTCGGTC AGGTGGATGG CGTGATTGAG GCTCGCCGCC TCTAA
|
Protein sequence | MVSVREAHFN DVDFNLEDWV VRYVDDAEDA RVLLELLRTV QAMPMKDAKA HDALMSRARE MIEILAPLNM DLETLQAAVL FSVQEAGLLP QEKLVEKFGD KLGNLVASVV TMNAIGSLKL SEQSRSAEMQ IDNIRKMLLA MVEDVRAVVI KLAERVCLLR AVKNADEETR VLLAREIADI YAPLANRLGI GQLKWELEDI SFRYLHPETY KEIAKQLDGK RIDRETYIEQ FVNDLQAKLD EEHIRAKVYG RPKHIYSIWR KMKGKHLKFD ELFDVRAVRI VTDRLQDCYG ALGVVHTLYH HIPREFDDYV ANPKPNGYQS IHTIVVGPEG KTVEIQIRTE AMHQDAELGV AAHWKYKEGH AGKQSGYEEK INWLRKILQW QEDVVESGNL VEEIRSQVFE DRVYVFTPSG EVVDLPAGST VLDFAYYIHS QVGHKCIGAK VDGRIVPFTY QVETGERIEI ITSKHPNPKR DWLNPNLGYI KTSRARSKIQ HWFKQQDRDK NLAAGREMLE VELGRVGLTL KDAASAIERF NMTNMDDLLA AIGGGDVRLN QVVNHIQSRM RVHEISDEEA VEDLVKKGQH KPIAKTRDQI EVNGVGNLLS HIAQCCRPVP GDEIFGFITK GRGISVHRAD CEQVKELMRA HPERVVDVVW GENYSGGYKI RLRVLANDRT GLLRDLTSVL AAEKSNVLAM SSSSDIKNQT AAIELELELY NVDGLSRVLS KLGQVDGVIE ARRL
|
| |