| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1033 |
|---|
| Symbol | |
|---|
| ID | 4603285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1250012 |
|---|
| End bp | 1252216 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780372 |
|---|
| Product | GTP diphosphokinase |
|---|
| Protein accession | YP_926910 |
|---|
| Protein GI | 119774170 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0165822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTCTG TCCGCGAAGC ACATTTCAAC GATGTCGATT TCAATCTGGA AGACTGGGTG
GTTCGGTATG TAGACGACGC CGAGGATGCC AGGGTGCTGC TAGAGCTGCT GCGCACCGTT
CAGGCGATGC CGATGAAGGA TGCCAAGGCC CATGATGCCC TGATGTCCCG TGCCAGAGAG
ATGATTGAAA TTCTGGCACC GCTGAATATG GACCTTGAGA CCCTGCAGGC GGCCGTACTG
TTTTCGGTGC AGGAAGCGGG GCTCTTACCC CAGGAAAAAC TGGTCGAAAA GTTTGGTGAC
AAGCTGGGTA ATCTTGTGGC CAGCGTCGTT ACCATGAATG CCATCGGCAG CCTGAAACTC
AGTGAACAGT CGCGTTCCGC TGAAATGCAA ATCGACAACA TCCGTAAAAT GCTGCTGGCC
ATGGTGGAAG ATGTGCGCGC CGTGGTGATT AAGCTTGCCG AGCGCGTGTG TCTGCTGCGG
GCAGTAAAAA ATGCCGATGA AGAAACCCGG GTGTTGCTGG CCCGTGAAAT CGCCGATATC
TATGCGCCGT TGGCAAACCG TTTGGGCATT GGCCAGCTCA AGTGGGAGCT TGAGGACATT
TCCTTCCGCT ATCTGCATCC TGAAACCTAC AAAGAAATCG CCAAACAGCT CGACGGAAAG
CGCATCGATC GCGAAACCTA TATAGAGCAG TTTGTGAATG ACCTGCAGGC CAAGCTCGAT
GAAGAGCATA TTCGCGCCAA GGTTTATGGT CGCCCAAAAC ACATCTACTC CATCTGGCGC
AAGATGAAGG GCAAACACCT CAAGTTTGAT GAGCTGTTTG ATGTACGCGC TGTGCGTATC
GTCACCGACC GTTTGCAGGA CTGTTACGGG GCCTTGGGCG TGGTGCACAC CCTCTATCAT
CATATTCCCC GGGAGTTTGA TGACTATGTC GCCAACCCCA AACCCAACGG CTATCAGTCC
ATTCACACTA TTGTGGTGGG GCCAGAAGGC AAAACCGTTG AAATTCAAAT TCGTACCGAA
GCCATGCATC AGGACGCCGA GCTGGGTGTG GCTGCACACT GGAAATATAA AGAGGGTCAT
GCTGGCAAGC AGAGCGGTTA CGAAGAGAAA ATCAACTGGC TGCGCAAAAT CCTGCAGTGG
CAGGAAGATG TGGTGGAAAG TGGCAACCTG GTGGAAGAAA TCCGCAGCCA GGTGTTCGAG
GACAGGGTGT ATGTATTTAC CCCGTCCGGT GAAGTGGTAG ATTTGCCCGC CGGCAGTACC
GTGCTCGACT TTGCCTATTA CATCCACTCT CAGGTTGGCC ACAAGTGTAT TGGCGCCAAG
GTGGATGGCC GCATCGTGCC CTTCACTTAT CAGGTGGAAA CCGGTGAGCG GATTGAAATT
ATCACCTCCA AGCACCCCAA TCCCAAGCGC GATTGGCTGA ATCCCAACCT GGGCTACATC
AAGACCTCCA GGGCCCGCAG CAAAATCCAG CATTGGTTCA AGCAGCAGGA CAGGGACAAA
AACCTGGCGG CCGGCCGCGA GATGCTGGAA GTCGAACTTG GCCGGGTGGG TCTGACGTTA
AAAGACGCCG CCAGCGCCAT AGAGCGCTTT AACATGACCA ATATGGACGA CCTCTTGGCG
GCCATCGGCG GTGGCGATGT GCGTCTCAAT CAGGTGGTTA ACCATATTCA GAGTCGGATG
CGGGTGCATG AGATCTCCGA CGAAGAAGCC GTGGAAGATC TGGTCAAGAA AGGCCAGCAC
AAGCCCATTG CCAAGACCCG GGATCAAATT GAAGTAAACG GCGTCGGGAA CCTCTTAAGC
CATATTGCCC AGTGCTGCCG CCCTGTGCCC GGTGATGAAA TTTTCGGTTT TATTACCAAG
GGACGCGGTA TTTCAGTGCA TCGAGCCGAC TGTGAGCAGG TGAAAGAACT GATGCGCGCC
CATCCAGAGC GGGTGGTGGA TGTAGTTTGG GGCGAAAACT ATTCCGGTGG CTACAAAATC
CGTCTGCGGG TACTCGCCAA CGACAGAACC GGATTGCTGC GGGATTTAAC CTCGGTGCTG
GCGGCGGAAA AATCCAATGT GCTTGCCATG AGCAGCTCAT CGGATATCAA AAACCAGACC
GCTGCCATTG AGCTTGAGCT CGAACTTTAC AACGTAGATG GCCTCTCGAG GGTGCTGTCC
AAGCTCGGTC AGGTGGATGG CGTGATTGAG GCTCGCCGCC TCTAA
|
|---|
| Protein sequence | MVSVREAHFN DVDFNLEDWV VRYVDDAEDA RVLLELLRTV QAMPMKDAKA HDALMSRARE
MIEILAPLNM DLETLQAAVL FSVQEAGLLP QEKLVEKFGD KLGNLVASVV TMNAIGSLKL
SEQSRSAEMQ IDNIRKMLLA MVEDVRAVVI KLAERVCLLR AVKNADEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPETY KEIAKQLDGK RIDRETYIEQ FVNDLQAKLD
EEHIRAKVYG RPKHIYSIWR KMKGKHLKFD ELFDVRAVRI VTDRLQDCYG ALGVVHTLYH
HIPREFDDYV ANPKPNGYQS IHTIVVGPEG KTVEIQIRTE AMHQDAELGV AAHWKYKEGH
AGKQSGYEEK INWLRKILQW QEDVVESGNL VEEIRSQVFE DRVYVFTPSG EVVDLPAGST
VLDFAYYIHS QVGHKCIGAK VDGRIVPFTY QVETGERIEI ITSKHPNPKR DWLNPNLGYI
KTSRARSKIQ HWFKQQDRDK NLAAGREMLE VELGRVGLTL KDAASAIERF NMTNMDDLLA
AIGGGDVRLN QVVNHIQSRM RVHEISDEEA VEDLVKKGQH KPIAKTRDQI EVNGVGNLLS
HIAQCCRPVP GDEIFGFITK GRGISVHRAD CEQVKELMRA HPERVVDVVW GENYSGGYKI
RLRVLANDRT GLLRDLTSVL AAEKSNVLAM SSSSDIKNQT AAIELELELY NVDGLSRVLS
KLGQVDGVIE ARRL
|
|---|
| |