| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1032 |
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| Symbol | rumA |
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| ID | 4603284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1248548 |
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| End bp | 1249879 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780371 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_926909 |
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| Protein GI | 119774169 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0127983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGT TTTTCAAAGC GAAACCCAAT CAAGCGAAAA AGCTCTCCCA AAAGATAGCA
CTCAAGGTGC AAAGACTCGA TCACTTGGGG GCCGGCATTG CCGAACATCA GGGCAAGGTG
GTGTTTATTC CGGGCGCTTT GCCGGGCGAA ACCGTGGAAG TGCAGCTCAC AGAGCAAAAG
AAAAACTATG CCCGTGCCAA ATTGCAGCGG GTATCAGAGG CAAGCCCCGA CCGGCAAACA
CCGCCTTGCC CCTGGTATGG CAAATGCGGT GGCTGCGATT TACAGCATCT GTCGTTGCCA
CGTCAGCTTG AATACAAGCG TCAGGCGCTG GGTGATATTG TCAGCCGTTC GGCTGCGCAA
ACAGTGACAG TCAATACCGA CGAAGTAAGC GGTGACAGCT GGCATTATCG TCGCCGGGCC
AGGTTAGCAA CTCTCCTCGA TAAAGAGACC AACCAGCTTG CACTGGGATT CCGGGAAGAG
GGCAGCAAAT CGGTAGTGGG TATCGACAGC TGTGCTGTGC TGGCCAGGCC GTTGTCTGAG
CTTATTTCGC CTTTTGCCAC GCTCCTTAAC CGTCTCAAGG GCAAGCAGCG GTTGGGGCAT
CTAGAGCTGA CACAGGCCGC CAATGGGCTT TTTGCCGTGT TGCGTGTGAC TGCCCCGCTG
GCTCAAAGCG ATAAAAAGCT GCTTTCGGCC TTTGCCGATG AGCGGCAAAT TGCCCTCTTG
CTGCAGGGGA ATGAAGGGGA GCTTGAGTTT CTCTCCAGCG GCCATGAGTT GCCCTATTAC
CAATTGGACG GTCTCAAGCT GGCTTTTGCG CCGGGTAACT TTATTCAGGT CAATGGCGAG
GTCAACCAGG CCATGGTGGC ACAGGCCATG AACTGGCTCG ATGTGCATGC CGGTGAGCGG
GTGCTCGACC TCTTTTGCGG CGTGGGCAAC TTCAGCTTGC CTCTTGCAAA GCAAGGAGCA
GAGGTAGTTG GCGTTGAAGG TGTGCCCGAA ATGGTGGCGC AGGCGAAGCA AAACGCTGCC
ATAAACGGCT TGGATAATCT CAGTTTTTAC TGCGCAGACC TCAGTGAAGA TTTGGCCGCC
GAGCCCTGGC TTGGCAAAAT CGATAAGCTG CTGCTGGACC CGGCCCGTGC CGGTGCATAT
GAGAGTCTTA AGTGGCTCAA AAAGATGAAG CCTGCCAAGG TGCTCTATGT GTCCTGTAAT
CCGGCAAGCC TTGCCCGTGA TTCAGTGCTG CTTTTTGAGG CAGGATATCA GCTGACCCGC
CTTGGTCTGG TGGACATGTT CCCCCAGACC CATCACAGCG AAGGCATGGC ATTGTTCGAA
TTGGTCAATT AA
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| Protein sequence | MAQFFKAKPN QAKKLSQKIA LKVQRLDHLG AGIAEHQGKV VFIPGALPGE TVEVQLTEQK
KNYARAKLQR VSEASPDRQT PPCPWYGKCG GCDLQHLSLP RQLEYKRQAL GDIVSRSAAQ
TVTVNTDEVS GDSWHYRRRA RLATLLDKET NQLALGFREE GSKSVVGIDS CAVLARPLSE
LISPFATLLN RLKGKQRLGH LELTQAANGL FAVLRVTAPL AQSDKKLLSA FADERQIALL
LQGNEGELEF LSSGHELPYY QLDGLKLAFA PGNFIQVNGE VNQAMVAQAM NWLDVHAGER
VLDLFCGVGN FSLPLAKQGA EVVGVEGVPE MVAQAKQNAA INGLDNLSFY CADLSEDLAA
EPWLGKIDKL LLDPARAGAY ESLKWLKKMK PAKVLYVSCN PASLARDSVL LFEAGYQLTR
LGLVDMFPQT HHSEGMALFE LVN
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