Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1026 |
Symbol | |
ID | 4603278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1241013 |
End bp | 1242677 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780365 |
Product | recombination and repair protein |
Protein accession | YP_926903 |
Protein GI | 119774163 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0497] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTGTC AGCTCAGCAT CAATAACTTT GCCATTGTTC GCTTTCTGGA ATTGGACTTC CGTCCGGGTA TGACCAGTAT TACCGGTGAA ACCGGTGCCG GTAAGTCTAT CGCCATCGAT GCCCTGGGGC TGTGCCTGGG TAACCGCGCC GACGCCGGTG CCGTGCGCCC CGGAGCCAGC AAAACCGAGG TCAGCGCCCG TTTCTCTCTG GATGATGTGC CACTGGCCCG GCGCTGGCTG GAGGACAACG ATCTCGAGCT GGACGACGAA TGTATTCTCA GGCGTACCAT CACTTCCGAT GGCCGTTCAC GGGCCTACAT CAATGGCAAT CCTGTCCCCC TCTCTCAGCT CAAATCCCTC GGGCAATATC TGGTGGGGAT CCACGGCCAG CATGCACACC ACGCTCTCTT AAAAAACGAA CACCAACTGA CGCTGCTGGA TAGCTATGCC AATCACCGCA TGCTGCAGGA GTCGGTCGCC AGCGCCTATC AGCGCTGTCG TCAGATCGAA GCCGAATTAA GGCAGCTTGA GCAAAGCCAG CAGGAACGCA TCGCCCGCAA ACAGCTGCTG CAGTATCAGG TTGAAGAATT GGACGAATTC GCCCTGATGG AAGGAGAGTT TGAACAAATC GAGGCCGAAC ACAAACGCCT CGCCAATGGC ACCGCACTGA TTGAAGATTG TCAGCACACC TTGTCGCTGC TCAGTGAATC CGACGAAGGC AATATTGAGT CGCTGTTAAA CCGAGCCTTA TCCCTGGCCG CAACCCTGGA GTCGCTTGAC CCTACCCTGG CCCCCATTGG GAATATGCTC AATGACGCCC TTATTCAGGT GCAGGAAAGC AGCAGCGAAC TTGGCCGTTA CCTGTCCAAT CTGGAGCTGG ACCCGGAACA TTTTGCCTAT CTCGAAGAGC GACTCTCCAA AGCCATGACC CTGGCACGAA AACACCATGT TGCCGCCGAT AAACTGGCTG CGCATCATCA GGAGCTTGCC AGGGAACTGG CCGGATTGGA TTCCGATGAG GCGCAGCTGG ATGAACTGAA GCAACAGGTG CAAACCAGCA GGGAGGCTTA TCTCAGTCAC GCGCAGAAGC TCAGTCAAAG CCGTCTTCGC TATGCCAAAG AACTGGATAA GCAGGTCACC GCCTCCATTC AGGAGCTCAA CATGCCAAAA GGTAAGTTCA CCATCGAGGT GAACTTCAAC GACAAGGTGA TGAGTGCAAA CGGCAGTGAC AGTGTGGAGT TTTTGGTTAC CACCAACCCA GGCCAGCCCC TGTCGCCATT GGCCAAGGTT GCCTCGGGCG GTGAACTGAG CCGCATTGGA CTGGGTATTC AGGTGATCAC CGCGAAAAAG GTCTCGACAC CCACACTGAT TTTTGACGAA GTGGATGTGG GGATTTCCGG CCCAACTGCG GCCGTGGTTG GCCGTATGCT CCGTGCCCTC GGTGAGGCAA CTCAGGTGTT TTGTGTCACC CACTTGCCCC AGGTTGCCGG TAATGGCCAT CAACATATGT TTGTGAACAA ATCCACTAAG GGTGGACAAA CAGAAACCTC GATGAAGCCA CTGGACAAAG ACGCCCGGAT ACAGGAACTG GCTCGCTTGC TGGGCGGCGA TACCATTACC GAAAATACTC TCGCCAATGC CCGCGAGCTG CTGCAAGGAA CGTAA
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Protein sequence | MLCQLSINNF AIVRFLELDF RPGMTSITGE TGAGKSIAID ALGLCLGNRA DAGAVRPGAS KTEVSARFSL DDVPLARRWL EDNDLELDDE CILRRTITSD GRSRAYINGN PVPLSQLKSL GQYLVGIHGQ HAHHALLKNE HQLTLLDSYA NHRMLQESVA SAYQRCRQIE AELRQLEQSQ QERIARKQLL QYQVEELDEF ALMEGEFEQI EAEHKRLANG TALIEDCQHT LSLLSESDEG NIESLLNRAL SLAATLESLD PTLAPIGNML NDALIQVQES SSELGRYLSN LELDPEHFAY LEERLSKAMT LARKHHVAAD KLAAHHQELA RELAGLDSDE AQLDELKQQV QTSREAYLSH AQKLSQSRLR YAKELDKQVT ASIQELNMPK GKFTIEVNFN DKVMSANGSD SVEFLVTTNP GQPLSPLAKV ASGGELSRIG LGIQVITAKK VSTPTLIFDE VDVGISGPTA AVVGRMLRAL GEATQVFCVT HLPQVAGNGH QHMFVNKSTK GGQTETSMKP LDKDARIQEL ARLLGGDTIT ENTLANAREL LQGT
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