| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1025 |
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| Symbol | |
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| ID | 4603277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1238998 |
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| End bp | 1240815 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780364 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding region |
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| Protein accession | YP_926902 |
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| Protein GI | 119774162 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCTA TTTCTCAAAA TCTGGGCCAG GCATACAGTG AACAACTTCC CAACCTGGGA
CAAAGCCTTT GCGACATCCT GTGCTTTTTT GGTTTGAAGC GCGTCTATGG AGTCGGCGGC
GATTTTGTGG CAAACCTTAT CAATGCCCTG GACGGTCCGC TGCAGGTACT TCCCTCCAGT
AACGAAATGC ACGCCGGATT CAGCGCTTGT GCACAGGCTG AGCTGACCGG TCTGGGGGCC
TGTCTGACAA CCTACACGGT GGGAAGCCTG CCCTGTGTCA GTGCCGCGGC CCTTGCCCGA
ACCGAAGGCC TGCCGGTGAT TTTCATGTCC GGCGCCCCCG GTGAAAATGA AATACAGGGC
CATGCCCTGC ACCATATGGT GCACCCGGGT TCAGGCTGGC ATACCGACCT CAATGCGGCG
CTCAATGCCT TTAAAGCATT GGGAATTCGA GCCGAGCGGC TGCAGGGACA GCGGCATCAG
GGACAACCCA ACGTTGCTGC CGCGCGCTTT TTTGAACTTG TGTGTGAGGC GGTGCAATCC
CGCCAGCCCG TGTATATCGA AGTGCCACGG GATCTGGTCA TGCAGCCGAC GCAGAGCCTG
CGACTTCCCC TGAATATCGA TGAGTTAAAT GCCATGACCC GGCTGAATCT TGCTGGCGCA
GGACTCATCG CCGACGATAT CTGCAGCCGT CTGGTGAAAG CCAAACATCC CCTGGTATAT
CTGGGGGAAC GTCTGCGAAT GAACAGCGCT TTGCTTGAGC GTATTGTGCA TTTTTGCCAG
CGCCTGGGAC TGCCCTACGC CACCAGTTGG TTTGCCAAGG GCATGGTCGA TGAATCTCAT
CCCTTGTGTC TTGGGGCATA TAATGGGGTA TTCAGCCAAT GCCGTGGTCA GGCGTATATC
GAAGAAAACG CGGATTATGT GCTTGAGTTT GGTACTGCCA TCTATGACTC AGACACCAAC
AATGCCTTCG CCAGCGGCAC TCACGCCATC GACACACATC CAAATAAGAC CCTGCTCAAA
GGCACCGCCC GTTGGGAGTT GGATTTACAG GCCGTGGTGG ATGCGCTGGA GAGGGCTAAC
CTGCCGGTAC GCAACCTGGC TTTGGTCAAT CAGAATAAAG ACCTGCACGA GGCAATAACA
CCGGATACCT CGTCGTCCCT GGGATATGCC AACCTTGCAC AGACCATCAA CCAATTTCAG
CGTGCAGCCG GGAAGGACTT TATTTTGGTA CCTGAGGTGG GTAACGCTCT CTTCGCCGCC
TTTGCTCTGG ACGCCCGAAG CTCAGATGTA GGCCGCAGTT TTCTTGCCAA CCCCTGGTAT
GCGGCCATGG GTACCAGTCT GCCCTATGCC CGGGCCATTG CCGATGAACT CAATGCCAAG
GGAAGCCCAC AGCCGATACT CTTGATCACC GGCGATGGCG GTTTTAATTT TCAATGTAAT
GAGTTGATTA ATCTGCAAAA GCAGAATGCA AACCTCATCA TTTTGTACAT GCGCAACAAC
CTCTTTCACC TCGGGAAATG CGGTGATGCT CCCATATACG CCTGCAACGA CTTAAGGTTT
GATGTCTCAA AACTGATTGC CGCTTACGGT GGCAAATATC ATCTGTGTCA GTCCGTGGAC
CGCCTCTATG AGGCGCTGGC AATGGGCGTT CAGGGTGGAT TACATCTGAT AGAAGTACCC
ACCTCCACTG AACCAGAGCA GCAAAGCCCC ATAGCCATCA AATTGAATAC CTATATCAGC
GCCAAAAACG GCAACCCTGA GGCCCTTATC TCCTGGAATA AACTCTGCGG TAATCTACCA
CCGACAGACG CTCAGTAG
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| Protein sequence | MTSISQNLGQ AYSEQLPNLG QSLCDILCFF GLKRVYGVGG DFVANLINAL DGPLQVLPSS
NEMHAGFSAC AQAELTGLGA CLTTYTVGSL PCVSAAALAR TEGLPVIFMS GAPGENEIQG
HALHHMVHPG SGWHTDLNAA LNAFKALGIR AERLQGQRHQ GQPNVAAARF FELVCEAVQS
RQPVYIEVPR DLVMQPTQSL RLPLNIDELN AMTRLNLAGA GLIADDICSR LVKAKHPLVY
LGERLRMNSA LLERIVHFCQ RLGLPYATSW FAKGMVDESH PLCLGAYNGV FSQCRGQAYI
EENADYVLEF GTAIYDSDTN NAFASGTHAI DTHPNKTLLK GTARWELDLQ AVVDALERAN
LPVRNLALVN QNKDLHEAIT PDTSSSLGYA NLAQTINQFQ RAAGKDFILV PEVGNALFAA
FALDARSSDV GRSFLANPWY AAMGTSLPYA RAIADELNAK GSPQPILLIT GDGGFNFQCN
ELINLQKQNA NLIILYMRNN LFHLGKCGDA PIYACNDLRF DVSKLIAAYG GKYHLCQSVD
RLYEALAMGV QGGLHLIEVP TSTEPEQQSP IAIKLNTYIS AKNGNPEALI SWNKLCGNLP
PTDAQ
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