| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1016 |
|---|
| Symbol | |
|---|
| ID | 4603268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1230843 |
|---|
| End bp | 1231979 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639780355 |
|---|
| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase |
|---|
| Protein accession | YP_926893 |
|---|
| Protein GI | 119774153 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA ACAGCGTTTT TTCCGCTCTT GACCGCGCCA TGATGGCCCG CGCCATCATG
CTGGCCAAGC GTGGCCAGTA CACCACCCGA CCCAATCCCA ATGTGGGCTG TGTGATAGTT
AATGACGCCG GTGACATCGT TGGCGAAGGA TGGCATATCC GCGCAGGCGG CCCCCATGCC
GAAGTGCATG CCCTCAAGGC TGCCGCAGAC AAGGCCCGGG GCGCCACTGC CTATGTCACT
CTTGAGCCCT GCAGTCACTA TGGACGCACA CCGCCCTGCG CCAAGGCGCT GATTGACAAT
GGCTTAAAGC GTGTCGTGGT GGCCATGACC GACCCCAACC CCCAGGTGGC GGGCAGGGGG
ATTAAGCTGC TTCAGGATGC TGGCATCGAA GTGGCTCACG GCCTGATGGA AGCCGAGGCG
CGCGCACTGA ACCCGGGCTT TTTGTCGCGG ATGGAGCGTA AACGCCCGTT TGTGACCGTC
AAAGTAGGGG CGAGTCTCGA CGGAAAAACC GCACTGTCCA GTGGTGAGTC CAAGTGGATA
ACAGGTCCCG AGGCGCGCCG CGACGTGCAA AGGCTTCGGG CCAAATCCTG CGCCCTGATT
ACCGGTATCG ATACTGTGCT GTTGGATGAC CCCAGCCTCA ATGTTCGCCA CGGTGAACTT
GGCAGTCTGG GAGCAAGCCT GACGGAGCCC GAGCTTATCC AACCCATTCG GGTTGTGCTA
GACAGTCAGC GGCGTATGAG CACTGATGCC AAACTCTTTG GTATCACTGG CCCGATACTG
CTGGTGTCTG CAGAGCCATA TGATGAGAAA TTTTTGCACT CGCTGCCGGA CTTTGTTACC
TGTTTGATCC TGCCCGGTTC CCATGGCCGT ATCGACCTTG CCGCACTGCT TAGCCACCTC
GGTGAAAACT GCAACCGGGT GCTGGTTGAA GCCGGCGGAA CCCTCGCCGG CGCCTTTATC
GCCGCGGGAC TTTGTGATGA GCTGGTGCTG TATCAGGCGC CAAAACTCCT TGGCAGCCAT
GGCCGCGATA TGCTGCAACT GCCCGACTAT CAGACCATGG CCGAGGTGCC GGGTCTTAAG
CTTATTGATG AGCGTAAAGT GGGCCAGGAT TGGCGCTTTA CCTTCACTGT GGCCTGA
|
|---|
| Protein sequence | MSNNSVFSAL DRAMMARAIM LAKRGQYTTR PNPNVGCVIV NDAGDIVGEG WHIRAGGPHA
EVHALKAAAD KARGATAYVT LEPCSHYGRT PPCAKALIDN GLKRVVVAMT DPNPQVAGRG
IKLLQDAGIE VAHGLMEAEA RALNPGFLSR MERKRPFVTV KVGASLDGKT ALSSGESKWI
TGPEARRDVQ RLRAKSCALI TGIDTVLLDD PSLNVRHGEL GSLGASLTEP ELIQPIRVVL
DSQRRMSTDA KLFGITGPIL LVSAEPYDEK FLHSLPDFVT CLILPGSHGR IDLAALLSHL
GENCNRVLVE AGGTLAGAFI AAGLCDELVL YQAPKLLGSH GRDMLQLPDY QTMAEVPGLK
LIDERKVGQD WRFTFTVA
|
|---|
| |