| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1006 |
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| Symbol | |
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| ID | 4603258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1217777 |
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| End bp | 1219261 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780345 |
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| Product | cyclic nucleotide phosphodiesterase, putative |
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| Protein accession | YP_926883 |
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| Protein GI | 119774143 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTATC TGATTGCCTT CCTGGCTGCC TGCTTATTCT TACTGGCGTG GCTTTGGTAT
CGCTACTCGC GCAGTACTGA GTTGTTTCTT CATCGTCTTA CGCAGGAGTT GCTCAGTAAA
GGCGAGCAGC GCCAGCCCCT GATGTTGACT GATATCCCTG AGTCTTTTTC AGCCCTGGTT
CAGGCGATTC AGCATGTATT GCTGCATACA CCGTTGCATA CCACCAAGGA TAAGCTTACC
GGCTTGCCCA ATCGGGTTGG TTTCAAGCGG GCCATTACCC ACTCCATGCC GCTCACATCC
GGCACCCTGG TATTAATAGA TCTCTATCGT TTCCGCTACG TAAACGATCT GTTCGGTTTC
GCTTTTGGCG ATACCCTGCT GCAATTATTT GCCGACCGTT TACGTTTAAT GCCGAAAAAG
CCCCGCCAGA TGGCGCGCAT GAATGGCGAT GAATTTTTGC TCTATTTCGA CACCTGTCTG
GACGAAAAAG GGCTGTTGGA GATTAAGCAA CTGTTGCAGC AGCCCTTCAG TATTCAGGAC
ACCCCTGTCT CGGTCAGATT ACAAATGGGG TATGTGCAAC TGGCACAGCA CCATGCAGAT
GTCAGCCAAA TGCTCAGGCG CGCCGATCTG GCACTTAAGC GTGCCCGCAG CGACAAAGAT
ATGCTGGCGG CTTATCAACA GGACGACGAT ATCAGTCAAC GTCGTGAACT TTTTATTATC
AACAGCTTGC CAAAGGCGTT GGCGCATAAT CAATTGTATC TGGTATACCA GCCCAAAGAA
TCGCTGCACC ACGGTGGCTG TGAGCAGGTC GAGGCGCTTA TCCGTTGGGA ACATCCTGAT
CTGGGATTGA TATCTCCCGC CGAGTTTATT CCGCTGGCAG AATATGCGGG AATGATCGAT
TTGGTCAGTG CCTGGGCACT GGAGCAAGTG TTGATGCAGC AGGTGCGCTG GCGCGCCGAA
GGCATACATA TTAGGGTGGC GGTGAATCTG TCGGTGGAGG ATATGCAGGA AGGCAATCTG
CCCACGATGG TACAGGCAGC GCTGGCGCGT TATCAGCTGC CCGGTGAGGT CTTGGCGCTG
GAAATCACTG AAAGTACCCT GATGTCCAAT TTGGCCCGCG CCACTGAAAA TATCGTCAAG
CTCAGGGAAA TGGGGGTGAA GGTCGCCATT GATGACTTTG GCACAGGTCA CTCTTCACTG
GCCTACCTCA AAGACTTGCC TGCTGATGAG GTGAAAATCG ACCGTGCGTT CCTCGATGGC
ATCATGGAAC AAGAGCGTGC ACGCAATATT ATGACCACCA GCATCCAGCT GGCCAAGCGC
CTTGGTTTTG AGGTGACGGT TGAGGGCGTG GAATCCGATG CCCTTCGCAA AATGTTGGCT
GCCATGGGCG CCGATAATAT TCAGGGGCAA TATTTCGCCA GGCCGATGCG GGCATTGGAG
CTGGAAATGG ACCTGCGGCG GCTTGGCATT GCCAGACGTG CCTGA
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| Protein sequence | MVYLIAFLAA CLFLLAWLWY RYSRSTELFL HRLTQELLSK GEQRQPLMLT DIPESFSALV
QAIQHVLLHT PLHTTKDKLT GLPNRVGFKR AITHSMPLTS GTLVLIDLYR FRYVNDLFGF
AFGDTLLQLF ADRLRLMPKK PRQMARMNGD EFLLYFDTCL DEKGLLEIKQ LLQQPFSIQD
TPVSVRLQMG YVQLAQHHAD VSQMLRRADL ALKRARSDKD MLAAYQQDDD ISQRRELFII
NSLPKALAHN QLYLVYQPKE SLHHGGCEQV EALIRWEHPD LGLISPAEFI PLAEYAGMID
LVSAWALEQV LMQQVRWRAE GIHIRVAVNL SVEDMQEGNL PTMVQAALAR YQLPGEVLAL
EITESTLMSN LARATENIVK LREMGVKVAI DDFGTGHSSL AYLKDLPADE VKIDRAFLDG
IMEQERARNI MTTSIQLAKR LGFEVTVEGV ESDALRKMLA AMGADNIQGQ YFARPMRALE
LEMDLRRLGI ARRA
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