| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0993 |
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| Symbol | |
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| ID | 4603245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1201160 |
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| End bp | 1204912 |
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| Gene Length | 3753 bp |
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| Protein Length | 1250 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780332 |
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| Product | ligand-binding sensor domain-containing protein |
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| Protein accession | YP_926870 |
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| Protein GI | 119774130 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCTGA TTCTTTCCTC GCTCATTCTC CTGTGTTGCT CACTGCTTTG CGCCGGTGCA
TACGGCTATA AACCCGCCTT TCAAACCCTG GAAGCCGAAC ACGGCTTATC CATGAATACC
GTCAACGACC TGGTCACAGA TTCCCGGGGG TATCTGTGGA TTGCCACCCA GGCAGGGCTC
AACAGATACG ACGGTAAACA CTTTAAAATT TATACCCAAA GCGATGCACC AAATGGACCG
TCGGCAAACG ATATTTCCTT TTTACATCTC TCCGCCAAAG GTGAACTCTG GTTATTGACA
GAAAATGCAG GGGTGAACCT GTATCAGCCA CTCACAGATA CCTTCAAGGT GTTTGGCGCA
GAGGCTGGTA TTCCCAATGT CCGTTTCACC GGCATCAGTG AAGATGCCTC CGGCGCTTTG
TGGCTGGCCA CCGATAAACT GGGCGTGCTG GAGTTTTCCC CGAGTGCAGG CCGGGTGGTA
AAGACCCACA GGATAGCGGG CAGCGGAAAC GTATTAGGTA TCACGGCCGA TGGCCGGGGC
GGATTTTGGC TTGCAATGCT TGGCGGTGTC TCCCATCTGA CACAGGATGG GCAAAGCAGG
AGCCCGGATA AGCTCAGAGG ATTATCGGTT TCTGCCATGA CAATCGACCC TGCAGGAAAC
CTTTGGCTTG GCACCGACAA CATGGAGCTG CTGCGCTATG GGCAGGACGA TGACTCCCTG
GAGGATTTCA GTAATCTTTT TCCATCGGAC ATCACCCGGG TTGCCATTGC AGATCTCTTG
CTGGATGTGT ACAGCCACAC CAATCACCAC CACAACGCCA TATCATCAAA CACCATCCCA
GCCACAGATA ACCAGGGGCA CCTGTGGATA TCAACCTCAG GCGCGGGTCT CGCTGAGTTG
GATATTGGCA AGCGGCGGCT TGAACGCTAC GAGCATTCTC CTGCCGATTA CCGCAGCCTC
AGCAACCAAA CGCTCACCCG CCTGTGGCTG GATGAAGAAC AACAATTGTG GATTGGCACC
CGCAGCGCGG GTATTGCCCG TTTGTCGTTG CCATCGAGGC AACTCAGGCA TATTCATGGC
CAGAGCTTTG AGAAAGATAA TCTGCAAAAC AGCGACATCC GCAGCTTCTT TCGCGACAGT
CAGGGACAAC TCTGGGTGGG CTCAACCGGT GGTTTACTGA GGGCAAAAGA ATCTGCTGAA
GGCGAGATAA TAGGGTTTCT TCCCCATGGT TTGCCGCTGC CAGAGCTGAC ACAGGCCTTT
ATCAGTTTTA TCAGGGAAGA TGACGATGGC CAGCTGTGGA TAGGCACCCG GGGCCTCGGT
TTGGTGATTG TCAGCAAAGA CAGGCAGAGT TTCCGGCAAT TTCGCCACGA CCCCGGTAAC
AGCACCAGCC TGCCAAGCAA CACCCTGTAC AGCCTGTTTC GCGATGCGCA AAGGCAGTTT
TGGATAACCA CACTGGATGG CGGCGTGGCG CGAATGGACG TCAACAGCGG CCAGTTCAGC
GCCATCGACA GAAGCAACAG TAATCTTCTG CCGGAAGATC AGGTCACAGG AATGGCGCAA
AGCAGTGATG GCACGCTTTG GATTGCCACC TACGGTGGTG GTCTGGCCAT GCTCAATACT
CAAGGCCAAT ACCGGCACTT CAACACAGAT TCCACCCCTG CCTTACCCAG TAATCATTTG
TTCTCAATCT TTATGGAAGA CAATGGCAAG TTATGGCTGG CATCCGACAA CGGTGTTATC
TCCCTCGATA CCCAAACCAT GGCCGTAGAC AGAATCGACA AATCCAAGGG ATTGATAGGT
GATGTGGTCT ATCTGATGAT TTTGGATGCT CACCACAGGC TGTGGGCCGG TACCGCAAGT
GGGTTAAGTG TTATCGACAC CCGCACTGGC AAGGTCCGCA GTTTTACCAG AGAAGATGGC
CTGCAGGACA ATGAATTTAA CTTTGGCGCT GCCTTTCTCG ACCGGGACAA CAGTCTGTAC
ATTGGCGGGA TTAACGGTTT CAACCATATA CACCCCGAAG ATCTGCCCAG ACGGGCGCCT
CCGAGAGCAC CGTCAATACA GAGCCTGATG TTAATGAACC AACCGGCCGA CTTGCCCCAA
TCGGCCAAAG GCAAAGGTGA GCCGGGAACT CTGAAAATTA ATCACACAGA CACCCTGTTT
GCCCTGGGCT ATCAATCGGC AGCGCTCACC GATGCCCACC AGCTCAGTTA CGAATACCGT
ATGCTCGGCT TGGATGACAA CTGGTTTACC GACAACGATC TGCAACAGGC CACCTTTACC
GGCCTGAGCC CCGGGCTGTA CCAATTTGAA GTCAGGGCCC GCAATATCGA CGGCGCCCAG
AGCCCTATCA CAGCCATGGG TATCACCATC GAAGCCGCAC CGTGGCAAAC CTGGTGGGCC
TATGGCCTGT ATTTACTCAT AGCGACCTGT ATCCTTGGGC TACTGCTGTA CATGAAGTTA
TCCAAATACC GCGCCAAAAT GGCGCTCATG GACAAGATAG CCGTCAGTGA ACAGCGTTTG
CAGCAGGCGC TCTCCAGCAG TGGCGATGAG TTCTGGGATT GGGAGATTGC CGCCCAGCGC
CTCACCCGCT CCAATACCTA TTTGAGTTAC CCTCCCCAGG AACTGAATCT GGCCAACACA
CTGCTGGTGG TTATTCATCC CGATGATGTT GCCAAAGTCA GGGCTGCAAT GGATGACTGC
CTCTACCGCG GCGTGGATGA ATTCGAAGTA AGCTACCGCG GCCGCACCGG TGAAGACCAG
TGGCTGTGGG TACTCAATCA CGGCAAAGTC ATTTCCCGGG ATGAAACCGG CCGTCCAGAA
CGGATTATGG GCACAGTCAA AAATATCCAG CGGCTCAAGG AGGCAGAAGA AGCCCTGCGA
GAACTCAATG CCGAGCTGGA ACAAAGAGTT ACCGTGAGGA CTCAGGAGCT GCAGGACAAA
AATGAAGAGC TCAACACCCT GCTTGAAGAA CTGCGTCAGA CCCGTGATGA ACTGTTGGAT
AAAGAAAAAA TGGCCACCCT CGGCGGCTTG GTGGCCAGTA TTACCCATGA AGTGAACACG
CCCATCGGGA TTTCGGTGAC CGCGGCCTCC CATCTGCAGG ACCGGGTGAG AGAATTTACC
GCCGCCTTTG AAAAAGGCGA AGTGGATGAA GATGATTTTG TGCTGTACCA GAGTGAAGTG
AATGACTGCT GTAAGCTGAT GCTCACCAAT CTTGAGCGTG CTGCCAAACT CATCAGCAGC
TTCAAAAAGG TATCGGTCGA CCAGTCCCAT GAAGAGTTGC GGGAGTTTGA CTTGAGCCAG
TACGTGGATG AGATCTTTCT CTCCCTCAAC CCCTTGCTGT CCCGTACCCC TCACAAGTAC
AGCTACGAGT GCGACCCTCA GTTGCTGGTG AACAGTAACC CTGGGATTTT CTATCAGATT
ATCAGCAACT TGTTTAACAA CTCCATCATC CACGCCTACC CGGATGGCCG CAGCGGCACC
CTGCGGCTTA CCATCAAGCG AACCCCAGAG GGCATAGTGC TGGACTACCG TGATGATGGC
TGCGGTATGA GTCAGGAAAT TCAGGACAAT ATCTTCACGC CTTTCTTTAC CACCAAGCGG
GGTAAGGGAG GCAGTGGCCT TGGCATGAAT ATCGTTTACA ACCTGGTTCA TCAGGTGCTG
GAAGGCGATA TCGAGCTGAT CACTGCGCCC CATCAGGGCG CTCACTTCAT CATCCGCCTG
CCCAAAAGCA TGGAACTGCA CCGCCCTCAG TAA
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| Protein sequence | MKLILSSLIL LCCSLLCAGA YGYKPAFQTL EAEHGLSMNT VNDLVTDSRG YLWIATQAGL
NRYDGKHFKI YTQSDAPNGP SANDISFLHL SAKGELWLLT ENAGVNLYQP LTDTFKVFGA
EAGIPNVRFT GISEDASGAL WLATDKLGVL EFSPSAGRVV KTHRIAGSGN VLGITADGRG
GFWLAMLGGV SHLTQDGQSR SPDKLRGLSV SAMTIDPAGN LWLGTDNMEL LRYGQDDDSL
EDFSNLFPSD ITRVAIADLL LDVYSHTNHH HNAISSNTIP ATDNQGHLWI STSGAGLAEL
DIGKRRLERY EHSPADYRSL SNQTLTRLWL DEEQQLWIGT RSAGIARLSL PSRQLRHIHG
QSFEKDNLQN SDIRSFFRDS QGQLWVGSTG GLLRAKESAE GEIIGFLPHG LPLPELTQAF
ISFIREDDDG QLWIGTRGLG LVIVSKDRQS FRQFRHDPGN STSLPSNTLY SLFRDAQRQF
WITTLDGGVA RMDVNSGQFS AIDRSNSNLL PEDQVTGMAQ SSDGTLWIAT YGGGLAMLNT
QGQYRHFNTD STPALPSNHL FSIFMEDNGK LWLASDNGVI SLDTQTMAVD RIDKSKGLIG
DVVYLMILDA HHRLWAGTAS GLSVIDTRTG KVRSFTREDG LQDNEFNFGA AFLDRDNSLY
IGGINGFNHI HPEDLPRRAP PRAPSIQSLM LMNQPADLPQ SAKGKGEPGT LKINHTDTLF
ALGYQSAALT DAHQLSYEYR MLGLDDNWFT DNDLQQATFT GLSPGLYQFE VRARNIDGAQ
SPITAMGITI EAAPWQTWWA YGLYLLIATC ILGLLLYMKL SKYRAKMALM DKIAVSEQRL
QQALSSSGDE FWDWEIAAQR LTRSNTYLSY PPQELNLANT LLVVIHPDDV AKVRAAMDDC
LYRGVDEFEV SYRGRTGEDQ WLWVLNHGKV ISRDETGRPE RIMGTVKNIQ RLKEAEEALR
ELNAELEQRV TVRTQELQDK NEELNTLLEE LRQTRDELLD KEKMATLGGL VASITHEVNT
PIGISVTAAS HLQDRVREFT AAFEKGEVDE DDFVLYQSEV NDCCKLMLTN LERAAKLISS
FKKVSVDQSH EELREFDLSQ YVDEIFLSLN PLLSRTPHKY SYECDPQLLV NSNPGIFYQI
ISNLFNNSII HAYPDGRSGT LRLTIKRTPE GIVLDYRDDG CGMSQEIQDN IFTPFFTTKR
GKGGSGLGMN IVYNLVHQVL EGDIELITAP HQGAHFIIRL PKSMELHRPQ
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