Gene Sama_0988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0988 
Symbol 
ID4603240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1196523 
End bp1197698 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content57% 
IMG OID639780327 
Producttetraheme cytochrome c 
Protein accessionYP_926865 
Protein GI119774125 
COG category[C] Energy production and conversion 
COG ID[COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 
TIGRFAM ID[TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATGGT TCTCTTCTCT CAGACAAACC CTCGGCAAGC CCGCACTCTC CCTGAGTCTG 
GGCTTTATTG CCATCAGCGC CTTTATCATG GGTATTGTGT TCTGGGGCGG CTTTAACACC
GCGCTGGAAG CCACCAATAC CGAAGAGTTT TGTATCAGCT GCCACAGCAT GGAAAGCAAG
CCCTATCAGG AGCTGCAGCA GACTGTGCAT TGGTCAAATC ACTCTGGCGT GCGTGCCACC
TGCCCCGACT GCCACGTGCC CCACGACTGG AGCCGCAAAA TCGCCCGCAA GATGGAGGCC
TCCCACGACG TATGGGGCTG GCTGTTCCAG ACCGTGAATA CCGACGAGAA ATTCGAAGCC
AAGCGTCTTG AGATGGCGAG CCGCGAGTGG AAACGCTTCG ATAGAGACAA CAGCCTTGCC
TGTAAAAACT GCCACGATTA CCAGTCGATG AAGTGGGACA CCATGTCGCC GCTGGCGCAA
AAACAGATGA AGCGCGCCGC CGAAATTGAC CAGTCCTGCA TCGATTGTCA CAAGGGCATT
GCCCACAAGC TGCCGGACAT GGGCACAGCC CGCGCCCCTG AGCTGATTGC CGAGGTAGGC
AGCGGCGTAA CCCCCAATGT AGGCGAGAGC TACTTCAGCG CCCTGACCAA GCCATTGTAT
CTGGATGCCA CCACCGCCGA AGAAGCGGGC ACTTTGAACG TGGCCACCAA GGTCAAGGTA
CTGGAAACCA GCGGCAAGCG CGTAAAAGTG GCCATTGAAG GCTGGCGCAA GCGTGTGGGT
GCAGGCCGGG TGATCTACTT CGACTTTGGG GTGAATATCC TCTCGGCTCA GCTGTCACTG
GATGCCGCCA AAACCCCTGA CCTTATCCGT ACCTTTGAAG AAAAACAGGA CCCCATGACG
GGTCTCATGT GGGAGCGAAT TGAAGCCGAC ATCTGGACCG ATGCCGACTA CCTGCTTGGT
GACATAGCCC CGCTATGGAG CTACGCCAAA ACCACCTACA GCAGCAGCTG CAGCGTATGC
CACACCCAGC CAGAGGAAGC CCACTTCGAT GCCAACACCT GGCCGGGCAT GTTCCAGGGC
ATGTTGGCCT TCGTCAACAT GGATCAGGAC ACCCAGGCGC TGGTACAGAA GTACCTGCAG
GAACACTCAG CCACCTTTAA CAAAGATGCC CACTAA
 
Protein sequence
MKWFSSLRQT LGKPALSLSL GFIAISAFIM GIVFWGGFNT ALEATNTEEF CISCHSMESK 
PYQELQQTVH WSNHSGVRAT CPDCHVPHDW SRKIARKMEA SHDVWGWLFQ TVNTDEKFEA
KRLEMASREW KRFDRDNSLA CKNCHDYQSM KWDTMSPLAQ KQMKRAAEID QSCIDCHKGI
AHKLPDMGTA RAPELIAEVG SGVTPNVGES YFSALTKPLY LDATTAEEAG TLNVATKVKV
LETSGKRVKV AIEGWRKRVG AGRVIYFDFG VNILSAQLSL DAAKTPDLIR TFEEKQDPMT
GLMWERIEAD IWTDADYLLG DIAPLWSYAK TTYSSSCSVC HTQPEEAHFD ANTWPGMFQG
MLAFVNMDQD TQALVQKYLQ EHSATFNKDA H