Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0988 |
Symbol | |
ID | 4603240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1196523 |
End bp | 1197698 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639780327 |
Product | tetraheme cytochrome c |
Protein accession | YP_926865 |
Protein GI | 119774125 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATGGT TCTCTTCTCT CAGACAAACC CTCGGCAAGC CCGCACTCTC CCTGAGTCTG GGCTTTATTG CCATCAGCGC CTTTATCATG GGTATTGTGT TCTGGGGCGG CTTTAACACC GCGCTGGAAG CCACCAATAC CGAAGAGTTT TGTATCAGCT GCCACAGCAT GGAAAGCAAG CCCTATCAGG AGCTGCAGCA GACTGTGCAT TGGTCAAATC ACTCTGGCGT GCGTGCCACC TGCCCCGACT GCCACGTGCC CCACGACTGG AGCCGCAAAA TCGCCCGCAA GATGGAGGCC TCCCACGACG TATGGGGCTG GCTGTTCCAG ACCGTGAATA CCGACGAGAA ATTCGAAGCC AAGCGTCTTG AGATGGCGAG CCGCGAGTGG AAACGCTTCG ATAGAGACAA CAGCCTTGCC TGTAAAAACT GCCACGATTA CCAGTCGATG AAGTGGGACA CCATGTCGCC GCTGGCGCAA AAACAGATGA AGCGCGCCGC CGAAATTGAC CAGTCCTGCA TCGATTGTCA CAAGGGCATT GCCCACAAGC TGCCGGACAT GGGCACAGCC CGCGCCCCTG AGCTGATTGC CGAGGTAGGC AGCGGCGTAA CCCCCAATGT AGGCGAGAGC TACTTCAGCG CCCTGACCAA GCCATTGTAT CTGGATGCCA CCACCGCCGA AGAAGCGGGC ACTTTGAACG TGGCCACCAA GGTCAAGGTA CTGGAAACCA GCGGCAAGCG CGTAAAAGTG GCCATTGAAG GCTGGCGCAA GCGTGTGGGT GCAGGCCGGG TGATCTACTT CGACTTTGGG GTGAATATCC TCTCGGCTCA GCTGTCACTG GATGCCGCCA AAACCCCTGA CCTTATCCGT ACCTTTGAAG AAAAACAGGA CCCCATGACG GGTCTCATGT GGGAGCGAAT TGAAGCCGAC ATCTGGACCG ATGCCGACTA CCTGCTTGGT GACATAGCCC CGCTATGGAG CTACGCCAAA ACCACCTACA GCAGCAGCTG CAGCGTATGC CACACCCAGC CAGAGGAAGC CCACTTCGAT GCCAACACCT GGCCGGGCAT GTTCCAGGGC ATGTTGGCCT TCGTCAACAT GGATCAGGAC ACCCAGGCGC TGGTACAGAA GTACCTGCAG GAACACTCAG CCACCTTTAA CAAAGATGCC CACTAA
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Protein sequence | MKWFSSLRQT LGKPALSLSL GFIAISAFIM GIVFWGGFNT ALEATNTEEF CISCHSMESK PYQELQQTVH WSNHSGVRAT CPDCHVPHDW SRKIARKMEA SHDVWGWLFQ TVNTDEKFEA KRLEMASREW KRFDRDNSLA CKNCHDYQSM KWDTMSPLAQ KQMKRAAEID QSCIDCHKGI AHKLPDMGTA RAPELIAEVG SGVTPNVGES YFSALTKPLY LDATTAEEAG TLNVATKVKV LETSGKRVKV AIEGWRKRVG AGRVIYFDFG VNILSAQLSL DAAKTPDLIR TFEEKQDPMT GLMWERIEAD IWTDADYLLG DIAPLWSYAK TTYSSSCSVC HTQPEEAHFD ANTWPGMFQG MLAFVNMDQD TQALVQKYLQ EHSATFNKDA H
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