| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0987 |
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| Symbol | |
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| ID | 4603239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1194019 |
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| End bp | 1196508 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780326 |
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| Product | trimethylamine-N-oxide reductase |
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| Protein accession | YP_926864 |
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| Protein GI | 119774124 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02164] trimethylamine-N-oxide reductase TorA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAC GTGATTTTTT AAAAGGCCTG ATGTCAGCCT CCTGTATGGC CATAGGCTCC
ACCAGCCTGC TGAGCCCATT GAACGCACTG GCCGCGCCCC GCGGCCGTGA CGAGTGGCTT
ACCACCGGCA GTCACTTTGG CGCCTTTAAA ATTCGCCGTA AAAACGGCGT GATTGCCGAG
GTGAAACCCT TCGAGCTGGA CAAGTATCCA ACGGATATGA TTAACGGCAT CAAGGGCCTG
GTGTACAACC CATCCCGTAT TCGCTATCCC ATGGTCAGGC TCGACTTTTA CAAGAACGGC
CACAGGAGCA ATACCGCCGA GCGCGGCGAC TTCCGCTTTG TGCGGGTGAC CTGGGATGAG
GCGCTGGAGC TTTTCAAAGC GTCGCTGGAT GAAATACAGA CCAAGTATGG CCCAAGCGGC
CTGCACGCCG GCCAAACCGG CTGGCGCGCC ACCGGTCAGC TACATTCTTC CACCAGCCAT
ATGCAGCGTG CGGTGAGCAT GCACGGCAAC TTCGTCAAAA AGGTGGGCGA CTACTCCACC
GGCGCGGGCC AGACCATTCT GCCTTACGTG CTCGGCTCCA CTGAAGTGTA TGCCCAGGGC
ACATCCTGGC CGCTGATTTT GAAAAACACC AAGACCCTGA TTTTGTGGTC TAACGATCCG
GTGAAGAACC TGCAGGTGGG CTGGAACGCC GAAACCCATG AGTCCTACGC CTATCTCGCC
GAGCTCAAAG CGAAAGTGGC CAAGGGGGAA ATTCGGGTCA TCAGCATCGA CCCAGTGGAA
ACCAAGACCC AGGCTTACCT TGGCTGCGAG CGGCTATACA TCAACCCCCA GACCGACGTG
GCCATGATGC TCGCAATCGC TCACGAGCTG TATCAGCAAA AGCTGTACGA CGCCGAGTTT
GTGAAGGGCT ACAGCCTGGG CTTTGAGGAC TTTTTGCCTT ATCTGCTTGG CAAAACCGAC
AACACTCCCA AAACGCCTGA GTGGGCCGAA GCCATTTGCG GCGTGAGCGC AGCAACCATT
CGCGACCTCG CCAAAGTGAT GGTGAAAGAC CGCACCCAAA TCATGATGGG CTGGTGTATC
CAGCGCCAGC AGCATGGCGA GCAGCCGTAC TGGATGGCAG CGGTACTGGC CACCATGATA
GGTCAGATTG GTCTGCCGGG CGGTGGCATC AGCTATGGCC ACCACTACTC CAGCATCGGC
GTGCCGGCCA CCTCGGCGGC AGCCCCCGGC GCCTTCCCCC GTAACCTCGA TGAAGGCAAA
AAGCCGCTGT TTGACAGCAA CGACTTCAAA GGCGCCAGCA GCACCATTCC GGTGGCGCGC
TGGGTGGATG CCATCCTTGA GCCCGGCAAA ACCATCGACG CCAACGGCAG CCGGGTGACT
TACCCCGATA TCAAGATGAT GGTGTTCTCG GGCAACAACC CCTGGAACCA CCATCAGGAC
AGAAACCGCA TGAAGCAGGC GTTCCAGAAA CTGGAAGCCG TGGTCACCAT AGATGTGAAC
TGGACCGCCA CCGCCCGCTT CAGTGACATA GTGCTGCCCG CCTGCACCAC GCTGGAGCGC
AACGATATCG ACGTGTACGG CAGCTACGCG AGCCGCGGCA TTTTGGCGAT GCACAAGATG
GTGGAGCCGC TGTTCGACAG TCTGTCCGAT TTTGACATCT TCACCCGTTT TGCCGCCATC
CTTGGCCGCG AACAGGAATA CACCCGCGGC ATGAATGAAA TGCAGTGGAT TGAGCACCTG
TACAACGAGT GTCGTGAGGC CAACAAGGCC AAGTACCCAA TGCCGGACTT CCAGACGTTC
TGGAAAGAAG GCTATGTGCA CTTTGGTGAA GGTGAAGAGT GGACCCGTCA TGCGGATTTC
CGTGCCGATC CGGAAATCAA CCCGCTTGGT ACGCCGTCTG GTCTGATTGA AATTTTCAGC
CGCAAGATTG CCGCCTTTAA CTACGATGAC TGCCCCGGCC ACCCCAAGTG GATGGAGAAA
AAGGAGCGCA GCCACGGTGG CCCCGGCAGC GACAAGCACC CACTGTGGCT GCAATCCTGC
CACCCGGACA AGCGCCTGCA CTCACAGATG TGTGAAAGCG AAGAGTACCG CGCTACCTAT
ACAGTTAAAG GCCGCGAGCC TGTGTACATC AGCCCCGAGG ATGCCAAGGC CCGTGGCGTG
AAAGACGGTG ACTTAGTGCG GGTCTTCAAT GACCGCGGCC AGGTGCTGGC CGGCGCCGTG
ATTTCCAAGC GCTTCCCCAA AGGGGTTATC CGTATCCACG AAGGCGCCTG GTATGGCCCT
GTGGGCAAGG ATGGCAGCAA AGAAGGCGGC AGCGAAATCG GCGCCCTTTG CTCTTTTGGT
GACCCCAACA CCCTGACCAT GGACATTGGT ACCTCCAAAC TGGCGCAGGC CTGTGCGGCC
TACACCTGTC TGGTGGACTT TGAGAAGTTC GAGGGCAAGG TGCCCGAGGT CAGCTCATTC
ACAGGCCCTG TGGAGGTTAA TCTGTCATGA
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| Protein sequence | MKRRDFLKGL MSASCMAIGS TSLLSPLNAL AAPRGRDEWL TTGSHFGAFK IRRKNGVIAE
VKPFELDKYP TDMINGIKGL VYNPSRIRYP MVRLDFYKNG HRSNTAERGD FRFVRVTWDE
ALELFKASLD EIQTKYGPSG LHAGQTGWRA TGQLHSSTSH MQRAVSMHGN FVKKVGDYST
GAGQTILPYV LGSTEVYAQG TSWPLILKNT KTLILWSNDP VKNLQVGWNA ETHESYAYLA
ELKAKVAKGE IRVISIDPVE TKTQAYLGCE RLYINPQTDV AMMLAIAHEL YQQKLYDAEF
VKGYSLGFED FLPYLLGKTD NTPKTPEWAE AICGVSAATI RDLAKVMVKD RTQIMMGWCI
QRQQHGEQPY WMAAVLATMI GQIGLPGGGI SYGHHYSSIG VPATSAAAPG AFPRNLDEGK
KPLFDSNDFK GASSTIPVAR WVDAILEPGK TIDANGSRVT YPDIKMMVFS GNNPWNHHQD
RNRMKQAFQK LEAVVTIDVN WTATARFSDI VLPACTTLER NDIDVYGSYA SRGILAMHKM
VEPLFDSLSD FDIFTRFAAI LGREQEYTRG MNEMQWIEHL YNECREANKA KYPMPDFQTF
WKEGYVHFGE GEEWTRHADF RADPEINPLG TPSGLIEIFS RKIAAFNYDD CPGHPKWMEK
KERSHGGPGS DKHPLWLQSC HPDKRLHSQM CESEEYRATY TVKGREPVYI SPEDAKARGV
KDGDLVRVFN DRGQVLAGAV ISKRFPKGVI RIHEGAWYGP VGKDGSKEGG SEIGALCSFG
DPNTLTMDIG TSKLAQACAA YTCLVDFEKF EGKVPEVSSF TGPVEVNLS
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