| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0976 |
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| Symbol | deoD |
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| ID | 4603228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1180325 |
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| End bp | 1181035 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780315 |
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| Product | purine nucleoside phosphorylase |
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| Protein accession | YP_926853 |
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| Protein GI | 119774113 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0813] Purine-nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00392055 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTACAC CACACATTAA TGCTGTAGAA GGTGCATTTG CTGAAACCGT ACTTTTCCCG
GGCGATCCGC TGCGTGCCAA GTACATTGCC GAAACCTTCC TCGAAAACGT TGAGCAGGTT
ACCGATGTAC GTAACATGTT GGGCTTCACC GGTACTTACA AGGGCAAGCG CATCTCTGTG
ATGGGCTCTG GCATGGGTAT CCCAAGCTGT TCTATTTACG CTACCGAGCT TATCAAAGAC
TATGGCGTGA AGAACCTCAT CCGTGTGGGT ACCTGTGGTG CCATCAGCAC TGACGTTAAG
GTTCGTGACG TGATCATCGG TATGGGCGCC TGTACTGATT CTCAGGTAAA CCGTCTGCGC
TTCAAGGGCC AGGACTTTGC CGCCATCGCC GACTACAGCC TGCTGAGCGC CGTGGTTGAG
TCTGCCAAGA CTCACGGTAT CCAGACCCGC GTTGGTAACG TATTCTCTGC CGACCTGTTC
TACACGCCAG ATCCTGAAAT GTTCGACGTG ATGGAGAAGA TGGGTGTTCT GGGCGTTGAG
ATGGAAGCCG CCGGTCTGTA CGGTGTGGCT CACGAGTTCG GTGCCCGCGC GCTGTGTGTG
GTAACTGTAT CTGATCACAT CCGTACCGGT GAGAAGACTA CCTCTGATGA GCGTCAGACC
ACCTTCAACG ACATGATCAT CATGACCCTG GATGCGGCCA TCAACCTCTG A
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| Protein sequence | MATPHINAVE GAFAETVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV
MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSQVNRLR
FKGQDFAAIA DYSLLSAVVE SAKTHGIQTR VGNVFSADLF YTPDPEMFDV MEKMGVLGVE
MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTTSDERQT TFNDMIIMTL DAAINL
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