| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0974 |
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| Symbol | deoA |
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| ID | 4603226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1177666 |
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| End bp | 1178997 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780313 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_926851 |
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| Protein GI | 119774111 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.290566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00118059 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCTGG CACAAGAGAT TATTCGCAAA AAACGCAACG CAGAGGCCCT CAGCAAAGAA
GAAATTCAAT TCTTTGTGAA GGGGATTACC GACAACAGCG TATCCGAAGG ACAGATTGCC
GCGCTGGGTA TGGCGGTATA TTTCAATGAC ATGACCATGG ACGAGCGTAT TGCGCTGACC
ACGGCCATGC GCGATTCAGG TACCGTGCTC AACTGGGATA GCCTGGGGTT GAACGGCCCT
GTTATTGATA AGCACAGCAC AGGCGGTGTG GGCGATGTGA TTTCGCTGAT GCTCGGCCCC
ATGGCCGCAG CCTGTGGTGG TTATGTGCCC ATGATTTCGG GCCGGGGGCT GGGTCATACC
GGTGGCACAC TGGATAAGTT TGACGCCATT CCCGGTTACC AAACCGAGCC CTCCAGCGAG
CTGTTCCGCA AAGTGGTAAA AGAAGCCGGT GTTGCCATTA TTGGCCAAAC CGGGGATCTG
GTGCCCGCCG ACAAGCGTTT CTATTCCATT CGAGACAACA CCGCCACAGT TGAGTCCATT
TCACTTATCA CCGCATCGAT TCTGTCCAAG AAGCTGGCCG CAGGCCTGGA TGCGCTGGCA
ATGGACGTCA AGGTAGGCAG CGGCGCCTTT ATGCCGACCT ACGAAGCCTC GTTGGAACTC
GCGCGCTCCA TTACCGCCGT GGCTAACGGC GCCGGCACCA AAACCACAGC GCTGCTCACC
GACATGAATC AGGTGTTGGC TTCCTGCGCC GGTAACGCGC TGGAAGTGAA AGAAGCCGTG
GATTTCCTGA CCGGAAAATA CCGTAATCCT CGCCTTTACG AAGTCACCAT GGGCCTGTGC
GCCGAGATGC TGGTGCTGGG TGGTCTGGCC GCCAATGACG CCGATGCCCG TACCAAGCTC
AACACAGTGC TGGATAACGG CCGTGCTGCC GAGATTTTTG GCAAGATGGT GTCCGGCCTG
GGCGGCCCTG CTGATTTCGT TGAAAGTTAC GATAAGTATC TGCCCAAGGC ATCCATAATA
CGCCCCGTGT ACGCAGAACG TGACGGCTTT GCCTATAGTA TGGTGACCCG TGAGCTGGGT
CTTGCCGTGG TCACTCTGGG TGGTGGCCGT CGCAAGCCCG GTGATGCACT GGATTACAGT
GTAGGCTTGT CCAACGTGTG TGCCCTTGGT CAGCCAATAA ACAAAGACAC GCCGCTTGCC
GTAATCCATG CCCAGTCTGA GGCCGCTTTT GAAGAAGCCG CCAGGGCCGT TCGTGGGGCT
ATCACTGTCA GCGACAAGCA ACCCGAAAAA ACACCTGAGA TCTATCAGTA CGTACGTGCT
GAAGATCTGT AA
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| Protein sequence | MFLAQEIIRK KRNAEALSKE EIQFFVKGIT DNSVSEGQIA ALGMAVYFND MTMDERIALT
TAMRDSGTVL NWDSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKEAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALA MDVKVGSGAF MPTYEASLEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNALEVKEAV DFLTGKYRNP RLYEVTMGLC AEMLVLGGLA ANDADARTKL
NTVLDNGRAA EIFGKMVSGL GGPADFVESY DKYLPKASII RPVYAERDGF AYSMVTRELG
LAVVTLGGGR RKPGDALDYS VGLSNVCALG QPINKDTPLA VIHAQSEAAF EEAARAVRGA
ITVSDKQPEK TPEIYQYVRA EDL
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