Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0968 |
Symbol | prfC |
ID | 4603220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1171131 |
End bp | 1172717 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780307 |
Product | peptide chain release factor 3 |
Protein accession | YP_926845 |
Protein GI | 119774105 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.463155 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000218803 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCAAATA CATTGCTTGC CGAAGTGGCT TCGCGCCGCA CCTTCGCCAT TATTTCTCAC CCGGACGCCG GTAAAACCAC CATTACCGAA AAGGTATTGT TGCACGGCCG CGCCATTCAA AGCGCCGGTA CTGTAAAGGG GCGGGGCAGC GGTCAGCATG CCAAGTCTGA CTGGATGGAA ATGGAAAAAG AGCGGGGTAT TTCGGTTACC ACCTCTGTGA TGCAGTTTCC TTACAACAGC TGCCTGGTGA ACCTGCTCGA TACCCCAGGT CACGAAGACT TCTCGGAAGA TACCTACCGT ACCCTGACGG CGGTAGATTC CTGTTTGATG GTGATTGATG CCGCCAAGGG TGTGGAAGAC CGTACCCGCA AGCTGATGGA AGTCACCCGT CTGCGTGATA CGCCCATCGT GACCTTTATG AACAAGCTTG ACCGTGATAT CCGCGATCCC ATGGAGCTGC TCGACGAGGT GGAGACAGAG CTTAACATCC TCTGCGCCCC CATCACCTGG CCTATTGGTT GCGGTAAATT GTTCAAGGGC GTTTATCACC TGCACCGTGA TGAAACCATC CTGTATCAGA CTGGCCATGG CCATACCATT CAGGAACTGC GCATTGTAAA AGGCCTGGAT AATCCGGATC TGGATGCTGC TGTTGGCAGT GACTTTGCCG AGCAGTTGCG TGAAGAGCTG GAGCTGGTGC GCGGCGCCTC CAATGAGTTC GACAAGGAAC TGTTTTTGAG TGGTGAGCTG ACACCGGTTT ATTTCGGTAC CGCCCTGGGT AACTTTGGTG TAGACCATAT GCTTGATGGC TTGACCGAAT GGGCGCCTGC ACCCATGCCA CGTGAGACCA GCGAGCGCAC CGTGGAAGCC GGGGAGGACA AGTTCTCGGG CTTCGTGTTT AAAATTCAGG CCAACATGGA TCCCAAGCAC CGTGACCGTA TCGCCTTTAT GCGCATAGTG TCGGGCAAGT ACACCCAGGG CATGAAGATG AAGCACGTGC GCATTGGCAA AACCGTGAAC ATCTCAGATG CCGTGACTTT TATGGCCGGT GATCGTGAGC GCGCCGAAGA AGCCTTTGCG GGCGATATTA TCGGTCTGCA CAACCACGGC ACCATCCAGA TTGGTGATAC CTTTACCCAG GGTGAAGATC TCAAGTTCAC CGGTATTCCC AACTTTGCAC CTGAAATGTT CCGCCGTATT CGTCTGAAAG ATCCGTTGAA GCAAAAGCAG CTGCTTAAGG GCCTGGTACA ACTTTCTGAA GAAGGTGCCG TACAGGTGTT CCGCCCGCTG GACACCAACG ATCTTATCGT TGGGGCTGTG GGGGTGCTGC AGTTTGAAGT GGTAGTTGCC CGCCTCAAGT CCGAATATAA CGTTGAAGCT ATCTACGAGG CGGTCAACGT GGCGACAGCG CGTTGGGTCT ATTGTGAAGA TGGGCGTAAA CTGGAAGAAT TCAAACGTAA GTGTTCCACC AATCTGGCAT TGGATGGTGG TGACAATCTC ACTTACATTG CCCCCACTAT GGTTAATCTG AATCTGTCGA TGGAACGTTA TCCCGACATT CAGTTTGCCA AGACCCGCGA GCATTAA
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Protein sequence | MSNTLLAEVA SRRTFAIISH PDAGKTTITE KVLLHGRAIQ SAGTVKGRGS GQHAKSDWME MEKERGISVT TSVMQFPYNS CLVNLLDTPG HEDFSEDTYR TLTAVDSCLM VIDAAKGVED RTRKLMEVTR LRDTPIVTFM NKLDRDIRDP MELLDEVETE LNILCAPITW PIGCGKLFKG VYHLHRDETI LYQTGHGHTI QELRIVKGLD NPDLDAAVGS DFAEQLREEL ELVRGASNEF DKELFLSGEL TPVYFGTALG NFGVDHMLDG LTEWAPAPMP RETSERTVEA GEDKFSGFVF KIQANMDPKH RDRIAFMRIV SGKYTQGMKM KHVRIGKTVN ISDAVTFMAG DRERAEEAFA GDIIGLHNHG TIQIGDTFTQ GEDLKFTGIP NFAPEMFRRI RLKDPLKQKQ LLKGLVQLSE EGAVQVFRPL DTNDLIVGAV GVLQFEVVVA RLKSEYNVEA IYEAVNVATA RWVYCEDGRK LEEFKRKCST NLALDGGDNL TYIAPTMVNL NLSMERYPDI QFAKTREH
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