| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0967 |
|---|
| Symbol | |
|---|
| ID | 4603219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1170119 |
|---|
| End bp | 1171024 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639780306 |
|---|
| Product | lipoprotein NlpI |
|---|
| Protein accession | YP_926844 |
|---|
| Protein GI | 119774104 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.095502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00485929 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTAA AACTCAGAAC ATTGTTGGTG TCGGCCCTGA TTGGGGCAAG TATGATGTCT
GGCGGCTGTG CGTCGACCAG TGGCAACACC TCGCTCAATG ATGCAGATGG TCGCTTGGTA
GTGGCCCCTC TGTTGCCGGA CTACAAGCAC GAAGTCAGCC TTGCTCGGCT GAACGAAGTA
CTTTCCACCA TGGACCTCAA CGAAGAGCAA TTGGCTCGGG TTTATTACGA GCGCGGCGTG
CTTTACGATA CTCTGGGGCT GAGGTTGATG GCGCGACTCG ATTTCCATCA AGCACTGAAA
ATCCTGCCTA ATATCGCTGA TGCTTATAAT TTTCTGGGTA TTTATTACAC CCAGGAAGGC
GATTTCGATA ATGCTTACGA AGCCTTTGAT GCCGTACTCG AGCTTGAACC CAATTATGAC
TATGCCTATC TGAACCGCGG TATCGCCCTT TACTATGGTG AGCGCAGCGA TTTGGCCGTC
AGTGATATGG ACATGTTCTT AAGACGCGAC CCCTCGGATG GTTACCGGGC GCTTTGGTAT
TATTTAATTG ATACCGAGCT TGACCGACAG AATGCGCTGA AGAATCTTGC CGAACACAGG
CAGTTGCTAA AAGATGACTG GGCCGCCGCC ATCGCCGATT TTTATTTGGG TAATGTGAGC
AAAAAAGCCC TGTTTGAAAA GGCGAAACTT GGCCTTAACC ATCCGCGTGA ATACGCCGAA
AGGTTGTGTG AGGCTTACTT CTATGTTGCC AAGGCGGAAG AGTCGTTGGG CAACAAAGAT
GCTGCTGCCA ACTACTTCCG TTTAGCGCTG GCGACCAACA TCTACGACTT TGTCGAACAC
AGATATGCCA GGGTCGAACT GGCACGTATG GCCGAGCAGG CTCAGACATC AATTGACAAG
CCTTAA
|
|---|
| Protein sequence | MELKLRTLLV SALIGASMMS GGCASTSGNT SLNDADGRLV VAPLLPDYKH EVSLARLNEV
LSTMDLNEEQ LARVYYERGV LYDTLGLRLM ARLDFHQALK ILPNIADAYN FLGIYYTQEG
DFDNAYEAFD AVLELEPNYD YAYLNRGIAL YYGERSDLAV SDMDMFLRRD PSDGYRALWY
YLIDTELDRQ NALKNLAEHR QLLKDDWAAA IADFYLGNVS KKALFEKAKL GLNHPREYAE
RLCEAYFYVA KAEESLGNKD AAANYFRLAL ATNIYDFVEH RYARVELARM AEQAQTSIDK
P
|
|---|
| |