| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0965 |
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| Symbol | |
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| ID | 4603217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1165609 |
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| End bp | 1167651 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780304 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_926842 |
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| Protein GI | 119774102 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00724002 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0458332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATTC GGTTCAAATC ACTTACCTGG AAACAAACCA ATCTCGTTGT CTTCACAGCG
CTGTTTTTTG CTGTTGCGAT TTTTATCATC GAGCTGGCTC TAATGGTAAT GTCGACCCGG
GAAGCCCTGA CCTCCAGCCA GCAGGAACTG CTTGATTCGG TTGAACAACC TGCAGCCAAT
GCCGTGTGGG CGTTAGACGA CAACCTCGCC CGCCAAACTC TTGAAGGGGT GCTCAAAGTC
GAACATGTGG GCGCCTCGGT TATCGAACTG GACGATGGTT CGATGTTCGT CTCAGTCACC
AACGGCAAGA ACACCTACTC AAATTTTTTT AATAGTTTAA GTGAAGAACT CTTCGGGGAT
TTACGGGAAA TTTCCCGTCC TTTGTACCGC CCTTTTTACT TTGAAGGCTC AAGACAACAG
CAATTGATTG GTAGCCTGAC CATCTTTTAC GATACCCAGG AGCTGGCCAA TACCCTGTTC
GGCCAGTTGA AAGTGGGTTT TTTGGCAACC CTGGCGCGAG CACTGTTTCT GACGCTGGTA
TTGTCCATCG TGTTTCACCG CTTTCTCACT CAGCCGATTG CCCGAATAAG TGAAGCCATC
GACAAGATTG AGCCCGAGTC ACCCGATGAA AACCTGCTGC CTATTTCAGA CGCCCACAAG
GACGACGAAC TCGGCTTGGT AAGCACCAAG CTGAATCAAA TTCTGCTGCA ATTCGGCCAG
ACACAAAGCA AGCTGCGTAA GATGGCGACC AGAGACCCCC TCACCGGCCT GCCAAACCGT
ACCTTGCTGC TTGAGACCAT AGCAGTGACC ATACAGCGCG CCAGGGTTCA CAAGCGTTCA
TTCACCCTGC TGTTTATCGA CCTGGACCGT TTTAAAAACG TCAACGACTC CCTGGGCCAT
GCTCTGGGCG ATCAGTTTCT TGCCCGTATC GCGCGGCTAC TGGAGCGGGT GGTGGGCGAT
AAAGGCACGG TTGCGCGCCT CGGTGGTGAT GAGTTCGTGA TCCTGGCGGA CGAAATCCAC
TGCGCCGATA TGGCAGCAGA CTTTGTAGAT AAGCTATTGG TCCAACTCAA CAACCCAATC
CAGCTTGGTG ATCACTCCAT CCACCCTGCT GCCTCTGTGG GGATATCCCT CTACCCTGAA
GATGGCAACA GTGCGGAGGA CCTTATCCGA CACGCCGATA TCGCCATGTA CAGCGCCAAG
GCCTCCGGCT CGAACCAGTG GGCCTTCTTT AAACAGCAAA TGACAGAGCG TGCTGCCGTG
CGCTTACGCA CTGAAGCGTC TTTGCACGAT GCGCTGAAAA ACGACGAGTT TGTCCTGCAC
TTTCAACCCA AGCTGGATTT GACCACAGGT AAAGTCATGG GCTGCGAGGC ACTTATCCGC
TGGCAAAAAG ATGGCCGCCT GATAAGCCCC ATGTCGTTTA TTCCAGTCGC CGAAGAAACC
GGCATTATCG TTCCCATAGG CCGCTGGGTA TTGGAGCAAA GCTGTAAAAC ACTGCGCCAC
TGGCAAAAGC AGTACAACTT TGCCATTCCC ATCGCAGTCA ATGTGGCATC ACAGCAATTT
GCCGATGCCA GCCTGGTGCC CGACATCAAG CAGATGGCGC TACGCTATCA AATATCACCA
GATTTACTGG AAATCGAAAT TACCGAAACC TCATTGATGA GCGACGTCGA AACGGCTATC
AGCAAACTGG AGCAGCTTAA AAATGCCGGT TTTGGTATTG CAGTAGATGA CTTTGGTACC
GGCTACTCGT CGCTTTCTTA CCTGCGACAC CTGCCGATTA CCACCATGAA GATTGACCGC
TGCTTCGTGA CCGACCTGCC CAACGACAGT GCCATCGCTT CGACCATCCT GATGCTGGGG
AAACAGCTGG ATCTTCGTAT TGTCGCGGAA GGTATTGAGA ATGAACAGCA GCTGCAGTGG
TTAAAAACTG CCGGGTGCGG TATCGGTCAG GGCTTTTACT TCAGCCCGCC ATTACCCATG
GAAGAGTTTG AAGAGAAATA CATTCGTTCA CAGACAGCAG AAATACAAAA CCTCCACGGT
TAA
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| Protein sequence | MAIRFKSLTW KQTNLVVFTA LFFAVAIFII ELALMVMSTR EALTSSQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGVLKV EHVGASVIEL DDGSMFVSVT NGKNTYSNFF NSLSEELFGD
LREISRPLYR PFYFEGSRQQ QLIGSLTIFY DTQELANTLF GQLKVGFLAT LARALFLTLV
LSIVFHRFLT QPIARISEAI DKIEPESPDE NLLPISDAHK DDELGLVSTK LNQILLQFGQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRARVHKRS FTLLFIDLDR FKNVNDSLGH
ALGDQFLARI ARLLERVVGD KGTVARLGGD EFVILADEIH CADMAADFVD KLLVQLNNPI
QLGDHSIHPA ASVGISLYPE DGNSAEDLIR HADIAMYSAK ASGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNDEFVLH FQPKLDLTTG KVMGCEALIR WQKDGRLISP MSFIPVAEET
GIIVPIGRWV LEQSCKTLRH WQKQYNFAIP IAVNVASQQF ADASLVPDIK QMALRYQISP
DLLEIEITET SLMSDVETAI SKLEQLKNAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVTDLPNDS AIASTILMLG KQLDLRIVAE GIENEQQLQW LKTAGCGIGQ GFYFSPPLPM
EEFEEKYIRS QTAEIQNLHG
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