| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0963 |
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| Symbol | truB |
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| ID | 4603215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1164226 |
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| End bp | 1165173 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780302 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_926840 |
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| Protein GI | 119774100 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0397132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0378785 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAGAC GCACCAAAGG GCGCAATATC GACGGTATCG TCCTGCTGGA TAAACCCACG
GGCATGAGTT CCAATCATGC CCTGCAGCGG GTTAAGCGCA TTTACAATGC GTCCAAAGCA
GGCCATACAG GCGCGCTCGA TCCTCTGGCG ACCGGCATGT TACCCGTGTG CCTGGGTGAG
GCAACCAAGT TTTCTCAGCA CCTGCTGGAT GCGGATAAAC GTTATCTGGT TACTGCCAAG
CTTGGTCAGC GCACTGACAC CAGCGATTCC GACGGCGAAG TGGTCAGTGA GCGGCCATTA
AACTTCACCC AGGAAGCGCT GGATGCTGCC TTGGACAGTT TCCGTGGTGA TACCCTGCAG
GTACCTTCGA TGTTTTCGGC GCTTAAGTAT CAGGGCCAGC CCCTGTATAA GTATGCCCGT
GAAGGTAAGG AAGTTCCGCG GGAAGCCAGA CCCATCACAG TGTTCGAGCT TAACTTCATC
AAGCTTGAAG GTGATGAGCT GACGCTGGAT ATTCACTGCT CCAAGGGTAC ATACATACGT
ACCATCATTG ACGATCTCGG TGAGAAGCTT GGCTGTGGCG CCCATGTGAT TATGCTCCGA
CGCACCGCCG TCGCCGGTTA CCCCTACGAG CGTATGGTGA CCATCGAAGC GCTTGAAGCA
TTGCTGGAGC AGGCTGAAAA GGAGGGCGTT GAACCCAAGA CCTTGCTCGA CCCGCTGCTG
CTGCCGATGG ATACCGCTGT CGCCAATTTT CCGGAGGTCA ATATTCCGGA TGCGGTTGCG
CCTTATTTGA TGAACGGTAA CCCGGTGCGC GTCGCAGGCG TGTCCAGCGA TAGCCTGTTG
CGTATTACCC TTGGTGAGGC GCGACGGTTC GTTGGTGTGG GCGCCATCAA TGACGATGGC
CTGCTGGCGC CCAAGCGCCT GGTTGTCTTT TACGACGATG AAGCCTAA
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| Protein sequence | MARRTKGRNI DGIVLLDKPT GMSSNHALQR VKRIYNASKA GHTGALDPLA TGMLPVCLGE
ATKFSQHLLD ADKRYLVTAK LGQRTDTSDS DGEVVSERPL NFTQEALDAA LDSFRGDTLQ
VPSMFSALKY QGQPLYKYAR EGKEVPREAR PITVFELNFI KLEGDELTLD IHCSKGTYIR
TIIDDLGEKL GCGAHVIMLR RTAVAGYPYE RMVTIEALEA LLEQAEKEGV EPKTLLDPLL
LPMDTAVANF PEVNIPDAVA PYLMNGNPVR VAGVSSDSLL RITLGEARRF VGVGAINDDG
LLAPKRLVVF YDDEA
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